rs1420779550

This variant is located in the HBB gene.

ClinVar annotation

Likely Pathogenic★★★
2 submitters10 publications
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Research that mentions this SNP (3)

Beta-thalassaemia in indigenous Belgian families: identification of a novel mutation
Case reportN=28Michel Heusterspreute et al.(1996)· Human Genetics

Molecular characterization of β-thalassemia in 28 individuals from 14 unrelated indigenous Belgian families identified seven different mutations in the β-globin gene, including four common Mediterranean mutations (codon 8 -AA, IVS-I-1 G→A, IVS-I-6 T→C, codon 39 C→T), two rarely described mutations (initiation codon T→C, codon 35 C→A), and one novel -CC deletion at codons 38/39 that can be detected by Ava II restriction analysis.

Traits studied:beta-thalassemia
Polymorphic pattern of the (AT)x(T)y motif at −530 5′ to the β‐globin gene in over 40 patients homozygous for various β‐thalassemia mutations
AssociationN=40Dimovski AJ et al.(1994)· American Journal of Hematology

This study characterized polymorphic patterns of the (AT)x(T)y repeat motif at position -530 in the β-globin gene promoter among 40+ homozygous β-thalassemia patients with different mutations and ethnic backgrounds. The authors found distinct associations between specific β-globin mutations and (AT)x(T)y patterns (e.g., IVS-1-6 and codon 39 mutations associated with (AT)7(T)7, IVS-11-1 with (AT)9(T)5), and established strong linkage between (AT)9(T)5 and the Xmn I site at -158. No direct association was found between (AT)x(T)y motif variations and elevated γ-globin expression or fetal hemoglobin levels, suggesting these are common polymorphisms rather than functional regulatory variants.

Traits studied:Beta-thalassemiaFetal hemoglobin levelsGamma-globin expression
Novel promoter and splice junction defects add to the genetic, clinical or geographic heterogeneity of ?-thalassaemia in the Portuguese population
Case reportN=77Paula Faustino et al.(1992)· Human Genetics

Study identifies the spectrum of β-globin gene mutations causing β-thalassemia in the Portuguese population. Four common mutations (codon 39 C→T at 39%, IVS1 nt1 G→A at 26%, IVS1 nt110 G→A at 17%, IVS1 nt6 T→C at 15%) account for 97% of defects in 93 chromosomes. Two novel mutations are described: a promoter C→T substitution at position -90 in the CACCC box and a 2-bp deletion (AG) in IVS2, along with one uncommon codon 121 G→T transversion. The study enables prenatal diagnosis in 95% of at-risk couples.

Traits studied:Sickle cell-thalassemiaThalassemia intermediaThalassemia majorβ-thalassemia

About HBB

The alpha (HBA) and beta (HBB) loci determine the structure of the 2 types of polypeptide chains in adult hemoglobin, Hb A. The normal adult hemoglobin tetramer consists of two alpha chains and two beta chains. Mutant beta globin causes sickle cell anemia. Absence of beta chain causes beta-zero-thalassemia. Reduced amounts of detectable beta globin causes beta-plus-thalassemia. The order of the genes in the beta-globin cluster is 5'-epsilon -- gamma-G -- gamma-A -- delta -- beta--3'. [provided by RefSeq, Jul 2008]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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