rs17782313
badMag 4.5This is a intergenic variant variant in the MC4R gene.
Key Literature Trait Associations
Obesity / BMI
Located 188 kb downstream of MC4R, this was the second obesity locus identified by GWAS (after FTO). The C allele increases BMI by 0.05 Z-score units per allele in adults (p = 2.8e-15 in 77,228 adults) and confers a 1.30-fold increased odds of severe childhood obesity (p = 8.0e-11 in 10,583 children). MC4R is the most common cause of monogenic severe childhood-onset obesity, and this common variant acts through the same melanocortin pathway regulating appetite and energy balance. Subsequent studies show sex-specific effects on eating behavior, with female carriers displaying greater disinhibition and emotional eating.
Type 2 diabetes mellitus
The C allele near MC4R is associated with increased type 2 diabetes risk. A large meta-analysis by Xi et al. 2012 (123,373 individuals across 19 studies) found OR 1.10 (95% CI 1.07–1.13, p=2.83×10⁻¹²), which remained significant after BMI adjustment (OR 1.06, p=2.14×10⁻⁵), indicating a pathway partially independent of adiposity. A broader 2024 systematic review (28,018 cases, 98,994 controls) confirmed the association with diabetes in allele contrast and dominant models. A Korean cohort study additionally found TC/CC carriers had 1.29-fold higher diabetes risk than TT homozygotes.
Hypertension
The MC4R rs17782313 C allele is associated with elevated hypertension risk. A 2024 systematic review and meta-analysis of 22 studies (28,018 cases, 98,994 controls) found OR 1.16 (95% CI 1.03–1.31) in the dominant model. This association is plausible given MC4R's role in the sympathetic nervous system regulation of blood pressure, and may be partly mediated through obesity but also reflects direct receptor signaling in cardiovascular control centers.
Appetite regulation
The C allele of rs17782313 is associated with increased appetite, consistent with MC4R's central role in hypothalamic satiety signaling. A 2025 systematic review and meta-analysis of 21 studies (48,560 participants) found C-allele carriers had significantly higher reported appetite (OR 1.25, 95% CI 1.01–1.49, p=0.038). Notably, no significant association was found with total energy intake, suggesting the effect may reflect subjective hunger perception rather than a consistent increase in caloric consumption. Epigenetic studies link the TT genotype to increased MC4R promoter methylation and decreased receptor expression.
Colorectal cancer
The C allele near MC4R shows a moderate association with colorectal cancer risk. A 2020 meta-analysis (6,517 cases, 16,886 controls across 6 studies) found overall cancer OR 1.12 (95% CI 1.01–1.24), driven specifically by colorectal cancer; no significant associations were found for endometrial or breast cancer. The biological link may involve obesity-mediated insulin and IGF-1 signaling, though a direct MC4R pathway role in colonic epithelium has also been proposed. The modest effect size and limited number of included studies warrants cautious interpretation.
Blood glucose
Beyond frank diabetes, the C allele near MC4R is associated with higher continuous blood glucose levels. A 2023 meta-analysis of 50 studies (58,716 subjects) found C-allele carriers had elevated blood glucose (SMD 0.09 mg/dL, 95% CI 0.02–0.16, p=0.01) relative to TT homozygotes. This modest but statistically robust effect is consistent with MC4R's role in insulin secretion and glucose homeostasis through central nervous system circuits, and complements the BMI-adjusted diabetes association observed in larger meta-analyses.
Body height
Large GWAS data from the GWAS Catalog identify rs17782313-C as nominally associated with modestly reduced body height (beta approximately −0.028 to −0.039 units, p=2×10⁻⁸ to 4×10⁻¹¹). The effect is small and may reflect pleiotropic effects of the MC4R locus on growth trajectories, or confounding with early nutritional status and adiposity. A candidate-gene study in Iranian women (Rasaei et al., 2023) similarly reported lower height in C-allele carriers. The clinical significance of this association is limited given the small absolute effect.
▶GWAS Catalog Trait Associations (5)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (5)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
▶Research that mentions this SNP (16)
▶Genetic variation of FTO: rs1421085 T>C, rs8057044 G>A, rs9939609 T>A, and copy number (CNV) in Mexican Mayan school‐aged children with obesity/overweight and with normal weightReviewLizbeth González‐Herrera et al.(2019)· American Journal of Human Biology
A literature review of 70 studies examining single nucleotide polymorphisms (SNPs) associated with obesity in Mexican populations published 2011-2021. The authors identified SNPs with differential behavior in Mexican compared to Caucasian populations, including rs17782313 (MC4R), rs6548238 (TMEM18), rs6265 (BDNF), rs7498665 (SH2B1), and notably rs6232 (PCSK1) associated with early-onset obesity in Mexican youth. The review emphasizes ethnicity-dependent genetic effects on BMI heritability (40-70%) and highlights genes involved in cholesterol metabolism and adipokine signaling pathways.
▶The obesity associated FTO gene variant and the risk of adverse pregnancy outcomes: Evidence from the SCOPE studyAssociationN=81Prabha H. Andraweera et al.(2016)· Obesity
This doctoral thesis examines the role of physical activity, physical fitness, and exercise on immunometabolism during pregnancy across six studies in overweight/obese pregnant women. In the genetic analysis (n=81), neonatal birth weight was significantly greater in mothers carrying the CC genotype at rs6567160 and rs17782313 in the MC4R gene, though gestational weight gain was not influenced by maternal FTO or MC4R genotypes.
▶Association of the LINGO2-related SNP rs10968576 with body mass in a cohort of elderly SwedesAssociationN=949Mathias Rask-Andersen et al.(2015)· Molecular Genetics and Genomics
Association study of 35 GWAS-identified body mass SNPs in 949 elderly Swedish participants (mean age 70-75 years). Significant association found between rs10968576 (LINGO2, intron 4) and BMI with a larger effect size (β = 0.69 kg/m²) than reported in younger populations, suggesting age-specific genetic effects on body mass in the elderly.
▶Common genetic variation in and near the melanocortin 4 receptor gene (MC4R) is associated with body mass index in American Indian adults and childrenAssociationN=7,081Yunhua L. Muller et al.(2014)· Human Genetics
This study investigated common genetic variation in the MC4R gene region in American Indians (n=7,081) and found that rs74861148 and rs483145 were independently associated with increased BMI in adults (β=0.68 kg/m² and β=0.58 kg/m², respectively), with a combined G-A haplotype showing the strongest association (β=0.89 kg/m², p=5.5×10⁻⁷). Additionally, the promoter SNP rs11872992 was nominally associated with BMI and showed a 12% reduction in MC4R promoter activity in vitro, and was associated with increased food intake (β=676 kcal/day, p=0.007) and decreased energy expenditure (β=-53.4 kcal/day, p=0.054).
▶Genetic variation at the CELF1 (CUGBP, elav‐like family member 1 gene) locus is genome‐wide associated with Alzheimer's disease and obesityReviewAnke Hinney et al.(2014)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
This literature review examines the influence of genetic polymorphisms on obesity development and adaptive responses to physical activity, focusing on five candidate genes: COMT (rs4680, Val158Met), DRD2 (rs1800497 Taq1A and rs1799732), FABP2 (rs1799883, Ala54Thr), FTO (rs9939609, A/T), and UCP1 (rs1800592, A-3826G). The review synthesizes molecular mechanisms, phenotypic associations, and implications for human health and training adaptations, noting that physical activity reduces the FTO genetic effect on obesity risk by 30-80% and that various polymorphisms show differential impacts on body composition and metabolic responses to exercise.
▶Polymorphism rs3123554 in CNR2 reveals gender‐specific effects on body weight and affects loss of body weight and cerebral insulin actionFunctionalN=160Caroline Ketterer et al.(2014)· Obesity
This mechanistic study investigated whether aging impairs cerebral insulin resistance through defects in blood-brain barrier transport or neural signaling. In 160 human subjects, CSF/serum insulin ratios were reduced with age. Mouse experiments showed that aged mice had impaired brain AKT phosphorylation and cortical activity after peripheral insulin injection, but responses were intact after direct intracerebroventricular insulin injection, suggesting age-related impairment of insulin transport across the blood-brain barrier contributes to cognitive decline.
▶FTO genetic variants and risk of obesity and type 2 diabetes: A meta‐analysis of 28,394 IndiansReviewN=26,684Senthil K. Vasan et al.(2014)· Obesity
This scoping review examined 18 observational studies (n=26,684) from low- and middle-income countries investigating gene-environment interactions affecting obesity risk. The review found statistically significant associations for 12 individual SNPs including FTO rs1421085, rs9939609, rs10163409, rs3751812, MC4R rs17782313, rs12970134, TMEM18 rs7561317, NEGR1 rs2815752, CARTPT rs2239670, UCP2 rs659366, CLOCK rs1801260, and FLJ33544 rs140133294, though most associations were not replicated across different populations and environmental exposures.
▶Associations of polymorphisms in the genes of FGFR2, FGF1, and RBFOX2 with breast cancer risk by estrogen/progesterone receptor statusAssociationN=2,416Yu‐Ling Cen et al.(2013)· Molecular Carcinogenesis
A hospital-based case-control study in rural and urban India (1,204 cases; 1,212 controls) examined genetic and lifestyle risk factors for breast cancer. Four SNPs in FGFR2 (rs1219648, rs2420946, rs2981575, rs2981582) showed positive associations with breast cancer (ORs 1.32-1.47). Additional SNPs in obesity and metabolic genes (rs374748 in FBN2, rs2922763 in HNF4G, rs2116830 in KCNMA1, rs11121832 in MTHFR, rs16886165 in MAP3K1, rs11594610 in TCF7L2, rs2274459 in MLN) were associated with increased breast cancer risk. Waist-to-hip ratio ≥0.95 showed strong association (OR 3.78; 95% CI 2.92-4.89), and women living first 20 years in rural areas showed protective effect (OR 0.77).
▶Common variants near BDNF and SH2B1 show nominal evidence of association with snacking behavior in European populationsAssociationN=14,000Sébastien Robiou-du-Pont et al.(2013)· Journal of Molecular Medicine
Genome-wide association study examining common variants near BDNF (rs6265, rs925946) and SH2B1 (rs7498665) in relation to snacking behavior across three European cohorts (French obese children, Swiss obese, D.E.S.I.R.). The study reports nominal evidence of association, with rs925946 in BDNF showing OR=1.21 (p=5.03×10⁻³) in the D.E.S.I.R. cohort and rs7498665 in SH2B1 showing OR=1.17 (p=9.57×10⁻³) in the Swiss cohort.
▶Susceptibility variants for obesity and colorectal cancer risk: The multiethnic cohort and PAGE studiesAssociationN=11,673Unhee Lim et al.(2012)· International Journal of Cancer
This case-control study of 2,033 colorectal cancer cases and 9,640 controls investigated whether BMI and waist size susceptibility variants are associated with colorectal cancer risk. Two obesity SNPs showed significant associations: KCTD15 rs29941 (OR = 0.90, p = 0.01) was protective, while MC4R rs17782313 (OR = 1.12, p = 0.02) increased risk. However, neither association remained significant after multiple comparisons correction, and overall obesity variants showed minimal effects on colorectal cancer.
▶Association Between Common Variants Near the Melanocortin 4 Receptor Gene and Severe Antipsychotic Drug–Induced Weight GainAssociationN=344Malhotra AK et al.(2012)· Archives of General Psychiatry
Genome-wide association study of 139 antipsychotic-naïve pediatric patients identified common variants near the MC4R gene (melanocortin 4 receptor) on chromosome 18 associated with severe antipsychotic drug-induced weight gain. The most significant SNPs (rs489693, rs646749, rs12970134) showed p-values ranging from 2.80E-07 to 3.26E-06 in the discovery cohort and replicated in three additional cohorts (n=73, 40, 92). Minor allele homozygotes of rs489693 exhibited significantly greater increases in body fat mass, triglycerides, leptin, insulin, and HOMA-IR.
▶Common polymorphism near the MC4R gene is associated with type 2 diabetes: data from a meta-analysis of 123,373 individualsMeta-analysisN=123,373Xi B. et al.(2012)· Diabetologia
Meta-analysis of 19 studies (34,195 cases, 89,178 controls) confirmed that the rs17782313 polymorphism near the MC4R gene is associated with type 2 diabetes risk in Europeans and Asians (OR 1.10, 95% CI 1.07-1.13, p=2.83×10⁻¹²). The association remained significant after BMI adjustment (OR 1.06, 95% CI 1.03-1.09, p=2.14×10⁻⁵), suggesting an effect independent of obesity.
▶Genetic variations of leptin and leptin receptor are associated with body composition changes in response to physical trainingAssociationN=1,146Antti Huuskonen et al.(2010)· Cell Biochemistry and Function
This case-control study of 1,146 Vietnamese preschool children (360 obese, 786 controls) examined LEP and LEPR gene variants in childhood obesity risk. SNP rs7799039 (LEP) showed significant association with obesity protection: the dominant model (AG+GG vs AA) had OR=0.713 (95% CI: 0.549-0.926, p=0.011), and the additive model showed 24.6% risk reduction per G allele (p=0.017). SNP rs1137101 (LEPR) showed no significant association. Gene-gene interaction analysis found the LEP_LEPR haplotype AG_GG reduced obesity risk by OR=0.687 (95% CI: 0.497-0.951, p=0.024) compared to AA_GG.
▶Variability in Ethanol Biodisposition in Whites Is Modulated by Polymorphisms in the Adh1b and Adh1c GenesReviewCarmen Martínez et al.(2010)· Hepatology
A comprehensive review of nutrigenetics and nutrigenomics examining how genetic variants influence individual responses to nutrients and dietary interventions. The paper discusses associations between numerous SNPs (rs9939609 in FTO, rs2287019 in GIPR, rs7903146 in TCF7L2, rs5219 in KCNJ11, and many others) and metabolic traits including obesity, type 2 diabetes, and other chronic diseases, along with epigenetic mechanisms by which phytochemicals (curcumin, resveratrol, lycopene) modulate gene expression. The review synthesizes current evidence for precision nutrition approaches tailored to individual genetic profiles.
▶Is the thrifty genotype hypothesis supported by evidence based on confirmed type 2 diabetes- and obesity-susceptibility variants?AssociationSoutham L et al.(2009)· Diabetologia
This study tests the thrifty genotype hypothesis by examining 17 confirmed type 2 diabetes susceptibility loci and 13 obesity-susceptibility loci for signatures of positive selection. Using ancestral/derived allele analysis, integrated haplotype scores (iHS), and population differentiation (FST), the authors found limited evidence supporting the thrifty genotype hypothesis. Only rs7901695 at TCF7L2 showed notably elevated FST values (0.579 between JPT+CHB and YRI populations), and FTO showed the strongest selection signal among obesity loci (iHS=1.991).
▶Combined effects of MC4R and FTO common genetic variants on obesity in European general populationsAssociationN=7,929Stéphane Cauchi et al.(2009)· Journal of Molecular Medicine
This prospective study examined the combined effects of FTO rs1421085 and MC4R rs17782313 obesity risk alleles in two large European cohorts (4,762 Finnish adolescents and 3,167 French adults). Subjects carrying 3-4 risk alleles had a 3-fold increased obesity susceptibility in childhood and 1.8-fold increased risk in adults (OR=1.21, p=0.02), with each additional risk allele increasing fat mass by 0.48% (p=0.001). The effects on type 2 diabetes were mediated through BMI. MC4R showed stronger male-specific effects and FTO effects were accentuated by low physical activity.
Gene information from NCBI Gene. Variant classifications from ClinVar.
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