rs2020917

This is a regulatory region variant variant in the COMT gene.

ClinVar annotation

Benign☆☆☆
1 submitter1 publication

Primary dilated cardiomyopathy (DCM)

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Research that mentions this SNP (3)

Association between COMT gene rs165599 SNP and schizophrenia: A meta‐analysis of case‐control studies
Meta-analysisN=9,634Harika Gozde Gozukara Bag et al.(2018)· Molecular Genetics & Genomic Medicine

Meta-analysis of 20 case-control studies examining the association between COMT gene rs165599 SNP and schizophrenia. Found no statistically significant overall association under four genetic models (OR ranged 0.955-0.985), though sex-specific analysis showed G allele carriers had increased schizophrenia risk in females (OR=1.366, 95% CI=1.094-1.706) compared to AA homozygotes.

Traits studied:Schizophrenia
The effect of catechol‐O‐methyltransferase polymorphisms on pain is modified by depressive symptoms
AssociationN=3,904Schwahn C. et al.(2012)· European Journal of Pain

This population-based study of 3,904 subjects examined the interaction between COMT and TXNRD2 SNPs and temporomandibular disorder (TMD) pain, modified by depressive symptoms. Six SNPs from the first COMT/TXNRD2 haploblock showed significant interactions with depressive symptoms (smallest p-value: 2.7 × 10^-10), with opposite SNP effects between depressed and non-depressed individuals. In non-depressed subjects, rs5993882 (COMT) was most associated with TMD pain, while in depressed subjects, rs1544325 (COMT) and TXNRD2 SNPs were preferentially associated. The findings indicate that COMT polymorphisms affect pain perception through a mechanism significantly moderated by depressive symptoms.

Traits studied:Depressive symptomsTemporomandibular disorders (TMD) pain
Examination of association to autism of common genetic variationin genes related to dopamine
AssociationN=403Anderson BM et al.(2008)· Autism Research

This association study examined 28 SNPs across 14 dopamine pathway candidate genes in 403 families with autism to test the hypothesis that common genetic variation in dopamine metabolism contributes to autism susceptibility. While rs2239535 (YWHAB, chromosome 20) showed the strongest nominally significant association (p=0.008), this did not remain significant after correction for multiple comparisons, and no significant gene-gene interactions were detected using Multifactor Dimensionality Reduction analysis.

Traits studied:AutismAutism Spectrum Disorder (ASD)

About COMT

Catechol-O-methyltransferase catalyzes the transfer of a methyl group from S-adenosylmethionine to catecholamines, including the neurotransmitters dopamine, epinephrine, and norepinephrine. This O-methylation results in one of the major degradative pathways of the catecholamine transmitters. In addition to its role in the metabolism of endogenous substances, COMT is important in the metabolism of catechol drugs used in the treatment of hypertension, asthma, and Parkinson disease. COMT is found in two forms in tissues, a soluble form (S-COMT) and a membrane-bound form (MB-COMT). The differences between S-COMT and MB-COMT reside within the N-termini. Several transcript variants are formed through the use of alternative translation initiation sites and promoters. [provided by RefSeq, Sep 2008]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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