B4GALT6

beta-1,4-galactosyltransferase 6

Summary

This gene is one of seven beta-1,4-galactosyltransferase (beta4GalT) genes in human. They encode type II membrane-bound glycoproteins that appear to have exclusive specificity for the donor substrate UDP-galactose; all transfer galactose in a beta1,4 linkage to similar acceptor sugars: GlcNAc, Glc, and Xyl. Each beta4GalT has a distinct function in the biosynthesis of different glycoconjugates and saccharide structures. As type II membrane proteins, they have an N-terminal hydrophobic signal sequence that directs the protein to the Golgi apparatus and which then remains uncleaved to function as a transmembrane anchor. This gene produces multiple protein isoforms - some of which are predicted to lack the N-terminal hydrophobic signal sequence and transmembrane domain. By sequence similarity, the beta4GalTs form four groups: beta4GalT1 and beta4GalT2, beta4GalT3 and beta4GalT4, beta4GalT5 and beta4GalT6, and beta4GalT7. The canonical enzyme encoded by this gene is a lactosylceramide synthase important for glycolipid biosynthesis. [provided by RefSeq, Jan 2020]

Known Variants17 total

rsidPosition (GRCh37)AllelesClassClinVar
rs37122040418:29,205,624T/Cuncertain significance
rs76390769018:29,206,258T/Cuncertain significance
rs75558569118:29,206,325C/Tuncertain significance
rs11322281718:29,216,314T/Gintron variant
rs91534812318:29,218,638C/Tuncertain significance
rs36816374318:29,218,678T/Cuncertain significance
rs18363641618:29,222,001T/Cintron variant
rs19994120818:29,225,371C/Tuncertain significance
rs134797447118:29,225,419T/Cuncertain significance
rs997310918:29,246,207A/Cdownstream gene variant
rs37252638118:29,246,231G/Auncertain significance
rs3521043718:29,264,296T/Cbenign
rs117323354618:29,264,323A/Tuncertain significance
rs77318314118:29,264,335T/Auncertain significance
rs37132314818:29,264,355T/Cuncertain significance
rs14321172718:29,264,380G/Auncertain significance
rs1043893318:29,273,129A/Gintergenic variant

Gene information from NCBI Gene. Variant classifications from ClinVar.