B4GALT6
beta-1,4-galactosyltransferase 6
Summary
This gene is one of seven beta-1,4-galactosyltransferase (beta4GalT) genes in human. They encode type II membrane-bound glycoproteins that appear to have exclusive specificity for the donor substrate UDP-galactose; all transfer galactose in a beta1,4 linkage to similar acceptor sugars: GlcNAc, Glc, and Xyl. Each beta4GalT has a distinct function in the biosynthesis of different glycoconjugates and saccharide structures. As type II membrane proteins, they have an N-terminal hydrophobic signal sequence that directs the protein to the Golgi apparatus and which then remains uncleaved to function as a transmembrane anchor. This gene produces multiple protein isoforms - some of which are predicted to lack the N-terminal hydrophobic signal sequence and transmembrane domain. By sequence similarity, the beta4GalTs form four groups: beta4GalT1 and beta4GalT2, beta4GalT3 and beta4GalT4, beta4GalT5 and beta4GalT6, and beta4GalT7. The canonical enzyme encoded by this gene is a lactosylceramide synthase important for glycolipid biosynthesis. [provided by RefSeq, Jan 2020]
Known Variants17 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs371220404 | 18:29,205,624 | T/C | — | uncertain significance |
| rs763907690 | 18:29,206,258 | T/C | — | uncertain significance |
| rs755585691 | 18:29,206,325 | C/T | — | uncertain significance |
| rs113222817 | 18:29,216,314 | T/G | intron variant | — |
| rs915348123 | 18:29,218,638 | C/T | — | uncertain significance |
| rs368163743 | 18:29,218,678 | T/C | — | uncertain significance |
| rs183636416 | 18:29,222,001 | T/C | intron variant | — |
| rs199941208 | 18:29,225,371 | C/T | — | uncertain significance |
| rs1347974471 | 18:29,225,419 | T/C | — | uncertain significance |
| rs9973109 | 18:29,246,207 | A/C | downstream gene variant | — |
| rs372526381 | 18:29,246,231 | G/A | — | uncertain significance |
| rs35210437 | 18:29,264,296 | T/C | — | benign |
| rs1173233546 | 18:29,264,323 | A/T | — | uncertain significance |
| rs773183141 | 18:29,264,335 | T/A | — | uncertain significance |
| rs371323148 | 18:29,264,355 | T/C | — | uncertain significance |
| rs143211727 | 18:29,264,380 | G/A | — | uncertain significance |
| rs10438933 | 18:29,273,129 | A/G | intergenic variant | — |
Gene information from NCBI Gene. Variant classifications from ClinVar.