CNTN6
contactin 6
Summary
The protein encoded by this gene is a member of the immunoglobulin superfamily. It is a glycosylphosphatidylinositol (GPI)-anchored neuronal membrane protein that functions as a cell adhesion molecule. It may play a role in the formation of axon connections in the developing nervous system. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]
Known Variants116 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs142892876 | 3:1,152,436 | C/T | intron variant | — |
| rs2092759452 | 3:1,189,708 | A/G | — | uncertain significance |
| rs777800992 | 3:1,189,732 | A/T | — | uncertain significance |
| rs62229413 | 3:1,262,379 | C/A | — | uncertain significance |
| rs770215724 | 3:1,262,388 | C/T | — | uncertain significance |
| rs1158478831 | 3:1,262,404 | A/T | — | uncertain significance |
| rs761461921 | 3:1,262,434 | A/T | — | uncertain significance |
| rs202086606 | 3:1,262,445 | T/C | — | uncertain significance |
| rs200776867 | 3:1,262,454 | A/G | — | uncertain significance |
| rs149735803 | 3:1,262,486 | G/A | — | likely benign |
| rs61739199 | 3:1,269,607 | C/T | — | benign |
| rs2094305649 | 3:1,269,614 | C/A | — | uncertain significance |
| rs141581143 | 3:1,269,658 | G/A | — | likely benign |
| rs9815195 | 3:1,301,130 | C/A | intron variant | — |
| rs115904769 | 3:1,320,121 | C/T | — | likely benign |
| rs143789454 | 3:1,320,141 | C/T | — | benign |
| rs915995227 | 3:1,320,146 | A/T | — | uncertain significance |
| rs6808056 | 3:1,320,187 | T/C | — | benign |
| rs769833336 | 3:1,337,296 | G/A | — | uncertain significance |
| rs188975492 | 3:1,337,317 | C/A | — | uncertain significance |
| rs764715506 | 3:1,337,318 | C/G | — | uncertain significance |
| rs200016320 | 3:1,337,326 | G/A | — | uncertain significance |
| rs150338565 | 3:1,337,371 | T/C | — | benign |
| rs147701168 | 3:1,337,390 | A/G | — | uncertain significance |
| rs769615424 | 3:1,337,392 | C/T | — | uncertain significance |
| rs773080572 | 3:1,337,396 | C/A | — | likely pathogenic |
| rs151325063 | 3:1,337,409 | C/A | — | uncertain significance |
| rs772254266 | 3:1,337,422 | A/G | — | likely benign |
| rs1696126654 | 3:1,337,473 | G/C | — | uncertain significance |
| rs137989555 | 3:1,337,479 | C/G | — | uncertain significance |
| rs766274114 | 3:1,339,609 | G/A | — | uncertain significance |
| rs202144505 | 3:1,339,647 | G/C | — | uncertain significance |
| rs2470085287 | 3:1,339,668 | C/T | — | uncertain significance |
| rs148780833 | 3:1,342,743 | C/T | intron variant | — |
| rs9861887 | 3:1,345,425 | C/G | — | — |
| rs144649526 | 3:1,363,344 | G/C | — | uncertain significance |
| rs762174474 | 3:1,363,360 | G/A | — | uncertain significance |
| rs1700874784 | 3:1,363,388 | A/C | — | uncertain significance |
| rs1381363937 | 3:1,363,389 | G/A | — | uncertain significance |
| rs148406106 | 3:1,363,411 | C/G | — | uncertain significance |
| rs562337434 | 3:1,363,413 | A/G | — | uncertain significance |
| rs1700891946 | 3:1,363,467 | G/T | — | uncertain significance |
| rs41293401 | 3:1,363,480 | A/G | — | likely benign |
| rs751356436 | 3:1,367,537 | C/G | — | uncertain significance |
| rs201154294 | 3:1,367,590 | C/G | — | uncertain significance |
| rs772492005 | 3:1,367,603 | T/C | — | uncertain significance |
| rs372135467 | 3:1,369,166 | C/T | — | uncertain significance |
| rs140156386 | 3:1,369,171 | A/G | — | uncertain significance |
| rs2470427721 | 3:1,369,181 | T/A | — | uncertain significance |
| rs550038823 | 3:1,369,217 | C/T | — | uncertain significance |
| rs185613504 | 3:1,369,241 | T/C | — | uncertain significance |
| rs137876595 | 3:1,369,255 | G/C | — | benign |
| rs265776 | 3:1,369,278 | G/A | — | benign |
| rs265771 | 3:1,371,573 | G/T | — | benign |
| rs774452899 | 3:1,371,580 | C/T | — | uncertain significance |
| rs370701039 | 3:1,371,595 | C/A | — | uncertain significance |
| rs776818442 | 3:1,371,600 | A/G | — | uncertain significance |
| rs1211951215 | 3:1,394,033 | C/T | — | uncertain significance |
| rs76487809 | 3:1,394,035 | C/G | — | benign |
| rs573436411 | 3:1,394,073 | A/T | — | uncertain significance |
| rs1336350265 | 3:1,394,136 | G/T | — | likely pathogenic |
| rs751364131 | 3:1,413,989 | C/T | — | uncertain significance |
| rs536988261 | 3:1,414,042 | G/C | — | uncertain significance |
| rs1404153225 | 3:1,414,070 | C/T | — | uncertain significance |
| rs139645898 | 3:1,414,075 | A/C | — | benign |
| rs1379081720 | 3:1,414,124 | A/G | — | uncertain significance |
| rs145045076 | 3:1,414,127 | A/G | — | benign |
| rs202137418 | 3:1,414,166 | A/T | — | benign |
| rs755410995 | 3:1,414,516 | C/T | — | uncertain significance |
| rs372282015 | 3:1,414,588 | G/T | — | uncertain significance |
| rs192037016 | 3:1,414,598 | C/T | — | uncertain significance |
| rs151334132 | 3:1,414,623 | C/T | — | likely benign |
| rs1182235624 | 3:1,414,632 | T/G | — | uncertain significance |
| rs757222881 | 3:1,415,334 | T/A | — | uncertain significance |
| rs760345464 | 3:1,415,375 | A/C | — | uncertain significance |
| rs369482427 | 3:1,415,378 | G/T | — | uncertain significance |
| rs747085809 | 3:1,415,408 | G/A | — | uncertain significance |
| rs1709492187 | 3:1,415,657 | G/C | — | uncertain significance |
| rs141146052 | 3:1,415,683 | G/A | — | uncertain significance |
| rs746952747 | 3:1,418,691 | C/G | — | uncertain significance |
| rs1294980674 | 3:1,418,706 | G/T | — | uncertain significance |
| rs561595854 | 3:1,418,752 | C/T | — | uncertain significance |
| rs17038365 | 3:1,418,753 | A/G | — | benign |
| rs191600695 | 3:1,424,646 | G/A | — | likely benign |
| rs754338687 | 3:1,424,649 | T/C | — | likely benign |
| rs2471029094 | 3:1,424,650 | G/A | — | uncertain significance |
| rs754797179 | 3:1,424,681 | G/A | — | uncertain significance |
| rs2291101 | 3:1,424,718 | A/G | — | benign |
| rs756067438 | 3:1,424,750 | G/A | — | uncertain significance |
| rs890087455 | 3:1,424,849 | C/T | — | uncertain significance |
| rs184122073 | 3:1,425,032 | G/T | — | likely benign |
| rs115667338 | 3:1,425,055 | C/T | — | likely benign |
| rs762757510 | 3:1,425,070 | C/A | — | uncertain significance |
| rs772031522 | 3:1,427,294 | G/A | — | uncertain significance |
| rs377237687 | 3:1,427,300 | A/G | — | likely benign |
| rs1249514058 | 3:1,427,347 | T/C | — | uncertain significance |
| rs1692780862 | 3:1,427,384 | G/T | — | likely benign |
| rs780033708 | 3:1,427,389 | C/T | — | uncertain significance |
| rs768757070 | 3:1,427,404 | T/C | — | uncertain significance |
| rs1400514435 | 3:1,427,428 | C/G | — | uncertain significance |
Showing 100 of 116 variants. Use the SNP search for the full list.
Gene information from NCBI Gene. Variant classifications from ClinVar.