LINC00673
long intergenic non-protein coding RNA 673
Summary
This gene produces a long non-protein coding RNA that is involved in the regulation of gene expression during tumor progression. This transcript can promote cell proliferation in gastric cancer through interaction with enhancer of zeste 2 and other epigenetic suppressors of gene expression, thereby downregulating target genes including Kruppel like factors 2 and 4. This transcript may also act as a tumor suppressor by promoting interaction between protein tyrosine phosphatase, non-receptor type 11 (Ptpn11) and ubiquitin ligase, resulting in degradation of Ptpn11 and lowered oncogenic signalling. Naturally-occurring variation at this locus results in the formation of a binding site for miR-1231, which negatively regulates activity of this transcript. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2017]
Known Variants4 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs141389156 | 17:70,403,690 | C/G | regulatory region variant | — |
| rs983318 | 17:70,413,253 | G/A | intron variant | — |
| rs113783242 | 17:70,520,485 | C/T | intron variant | — |
| rs718073 | 17:70,584,265 | C/G | — | — |
Gene information from NCBI Gene. Variant classifications from ClinVar.