SLITRK1
SLIT and NTRK like family member 1
Summary
This gene encodes a member of the SLITRK protein family. Members of this family are integral membrane proteins that are characterized by two N-terminal leucine-rich repeat (LRR) domains and a C-terminal region that shares homology with trk neurotrophin receptors. However, the protein encoded by this gene lacks the region of homology to neurotrophin receptors. This protein is thought to be involved in neurite outgrowth. Mutations in this gene may be associated with Tourette syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]
Known Variants124 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs1884707636 | 13:84,451,345 | G/T | — | uncertain significance |
| rs376941086 | 13:84,451,349 | A/G | — | uncertain significance |
| rs886050326 | 13:84,451,366 | A/T | — | uncertain significance |
| rs974042861 | 13:84,451,464 | C/T | — | uncertain significance |
| rs182027644 | 13:84,451,465 | A/G | — | uncertain significance |
| rs1046202 | 13:84,451,510 | A/T | — | likely benign |
| rs117206130 | 13:84,451,589 | G/A | — | likely benign |
| rs543615109 | 13:84,451,608 | T/C | — | uncertain significance |
| rs886050327 | 13:84,451,670 | T/A | — | uncertain significance |
| rs1884717761 | 13:84,451,767 | T/C | — | uncertain significance |
| rs1594116281 | 13:84,451,810 | A/C | — | uncertain significance |
| rs927605494 | 13:84,451,814 | G/T | — | uncertain significance |
| rs879347345 | 13:84,451,830 | T/G | — | uncertain significance |
| rs930757592 | 13:84,451,834 | T/G | — | uncertain significance |
| rs528447973 | 13:84,451,886 | G/A | — | uncertain significance |
| rs368937569 | 13:84,451,980 | G/C | — | uncertain significance |
| rs140472390 | 13:84,452,239 | G/C | — | uncertain significance |
| rs763748811 | 13:84,452,260 | C/T | — | uncertain significance |
| rs775907642 | 13:84,452,317 | C/T | — | uncertain significance |
| rs9602286 | 13:84,452,392 | C/T | — | likely benign |
| rs3737193 | 13:84,452,418 | A/G | — | likely benign |
| rs1884732288 | 13:84,452,455 | T/C | — | uncertain significance |
| rs1255142436 | 13:84,452,460 | C/A | — | uncertain significance |
| rs150400704 | 13:84,452,522 | C/T | — | uncertain significance |
| rs142645261 | 13:84,452,535 | C/T | — | uncertain significance |
| rs753539375 | 13:84,452,622 | C/A | — | uncertain significance |
| rs1054049003 | 13:84,452,664 | A/T | — | uncertain significance |
| rs886528117 | 13:84,452,687 | A/G | — | uncertain significance |
| rs754645864 | 13:84,452,709 | C/T | — | uncertain significance |
| rs9593836 | 13:84,452,751 | T/G | — | likely benign |
| rs144800086 | 13:84,452,791 | C/T | — | uncertain significance |
| rs544488747 | 13:84,452,803 | A/T | — | uncertain significance |
| rs191284403 | 13:84,452,863 | C/T | 3 prime UTR variant | pathogenic |
| rs57857456 | 13:84,452,903 | T/C | — | likely benign |
| rs886050329 | 13:84,452,977 | G/A | — | uncertain significance |
| rs560253600 | 13:84,453,008 | G/T | — | uncertain significance |
| rs138643687 | 13:84,453,081 | A/G | — | uncertain significance |
| rs980172227 | 13:84,453,270 | C/T | — | uncertain significance |
| rs141647372 | 13:84,453,292 | T/C | — | uncertain significance |
| rs886050330 | 13:84,453,322 | A/C | — | uncertain significance |
| rs886050331 | 13:84,453,385 | G/C | — | uncertain significance |
| rs979904707 | 13:84,453,454 | G/A | — | uncertain significance |
| rs568619249 | 13:84,453,485 | C/T | — | uncertain significance |
| rs201603283 | 13:84,453,513 | A/T | — | uncertain significance |
| rs760510344 | 13:84,453,522 | C/T | — | uncertain significance |
| rs200497030 | 13:84,453,529 | C/T | — | uncertain significance |
| rs2501000717 | 13:84,453,563 | G/A | — | uncertain significance |
| rs749388858 | 13:84,453,593 | G/T | — | uncertain significance |
| rs886050332 | 13:84,453,608 | T/G | — | uncertain significance |
| rs1884761103 | 13:84,453,633 | A/G | — | uncertain significance |
| rs2501001302 | 13:84,453,670 | G/A | — | uncertain significance |
| rs77908553 | 13:84,453,672 | G/C | — | conflicting classifications of pathogenicity |
| rs886050333 | 13:84,453,674 | A/G | — | uncertain significance |
| rs372988290 | 13:84,453,688 | C/G | — | uncertain significance |
| rs774882620 | 13:84,453,689 | G/T | — | uncertain significance |
| rs147148876 | 13:84,453,726 | G/A | — | uncertain significance |
| rs1199936878 | 13:84,453,836 | C/G | — | uncertain significance |
| rs377623606 | 13:84,453,844 | G/A | — | uncertain significance |
| rs1368546312 | 13:84,453,866 | T/C | missense variant | — |
| rs1035448844 | 13:84,453,892 | C/T | missense variant | uncertain significance |
| rs1390899607 | 13:84,453,929 | G/C | — | uncertain significance |
| rs761823041 | 13:84,453,942 | C/T | — | likely benign |
| rs2501003146 | 13:84,453,982 | C/T | — | uncertain significance |
| rs778653141 | 13:84,453,992 | C/T | — | uncertain significance |
| rs200447166 | 13:84,454,105 | C/T | — | uncertain significance |
| rs886050334 | 13:84,454,151 | T/C | — | uncertain significance |
| rs2501004087 | 13:84,454,192 | C/A | — | uncertain significance |
| rs549097396 | 13:84,454,228 | T/C | — | uncertain significance |
| rs753343543 | 13:84,454,238 | C/T | — | uncertain significance |
| rs766640879 | 13:84,454,239 | A/T | — | uncertain significance |
| rs1884779401 | 13:84,454,262 | G/A | — | uncertain significance |
| rs150504822 | 13:84,454,391 | T/A | missense variant | likely benign |
| rs1186290575 | 13:84,454,491 | A/T | — | uncertain significance |
| rs761639713 | 13:84,454,514 | C/T | — | uncertain significance |
| rs1310889852 | 13:84,454,517 | T/C | — | uncertain significance |
| rs749904055 | 13:84,454,521 | G/A | — | uncertain significance |
| rs1242154076 | 13:84,454,529 | G/A | — | uncertain significance |
| rs758806174 | 13:84,454,535 | A/C | — | uncertain significance |
| rs886050335 | 13:84,454,549 | C/T | — | uncertain significance |
| rs774009598 | 13:84,454,615 | C/T | — | uncertain significance |
| rs145628951 | 13:84,454,655 | A/C | — | likely benign |
| rs1884790796 | 13:84,454,691 | T/G | — | uncertain significance |
| rs867766209 | 13:84,454,730 | G/C | — | uncertain significance |
| rs775161127 | 13:84,454,753 | T/A | — | uncertain significance |
| rs202070945 | 13:84,454,778 | G/T | — | uncertain significance |
| rs78944082 | 13:84,454,787 | G/A | — | benign |
| rs1175103096 | 13:84,454,936 | A/G | — | uncertain significance |
| rs1884798326 | 13:84,454,942 | G/C | — | uncertain significance |
| rs760077886 | 13:84,454,993 | G/T | — | uncertain significance |
| rs144169256 | 13:84,455,039 | G/A | — | uncertain significance |
| rs184198908 | 13:84,455,178 | C/T | — | uncertain significance |
| rs149163916 | 13:84,455,197 | G/A | — | uncertain significance |
| rs746270900 | 13:84,455,205 | G/T | — | conflicting classifications of pathogenicity |
| rs2501008743 | 13:84,455,209 | A/G | — | uncertain significance |
| rs1235764463 | 13:84,455,302 | T/C | — | uncertain significance |
| rs751143571 | 13:84,455,349 | A/G | — | uncertain significance |
| rs368351965 | 13:84,455,448 | C/T | — | uncertain significance |
| rs200735834 | 13:84,455,497 | C/T | — | uncertain significance |
| rs371889710 | 13:84,455,526 | G/A | — | uncertain significance |
| rs772249536 | 13:84,455,561 | T/A | — | uncertain significance |
Showing 100 of 124 variants. Use the SNP search for the full list.
Gene information from NCBI Gene. Variant classifications from ClinVar.