rs10399931

This is a upstream gene variant variant in the CHI3L1 gene.

Research that mentions this SNP (3)

Lack of evidence for association of two functional SNPs of CHI3L1 gene (HC-gp39) with rheumatoid arthritis
AssociationN=376Sanjeev K. Srivastava et al.(2011)· Rheumatology International

This case-control study examined two functional SNPs of the CHI3L1 gene (rs4950928 and rs10399931) in 182 Hungarian rheumatoid arthritis patients and 194 healthy controls. Despite CHI3L1's known elevated levels in RA and prior associations with schizophrenia and sarcoidosis, no significant association was found between either SNP and rheumatoid arthritis susceptibility (all p > 0.05, ORs 0.95-1.09 with 95% CIs overlapping 1.0).

Traits studied:Rheumatoid arthritis
Failure to confirm genetic association of the CHI3L1 gene with schizophrenia in Japanese and Chinese populations
AssociationN=376Kazuo Yamada et al.(2009)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This case-control study examined two functional SNPs in the CHI3L1 gene (rs4950928 and rs10399931) previously associated with schizophrenia and sarcoidosis to determine if they associate with rheumatoid arthritis. In 182 Hungarian RA patients and 194 healthy controls, no significant associations were found between either SNP and RA risk (all p > 0.05), suggesting that CHI3L1 polymorphisms may not confer RA susceptibility despite elevated CHI3L1 levels observed in RA patients.

Traits studied:Rheumatoid arthritis
Common genetic variants and risk for non‐Hodgkin lymphoma and adult T‐cell lymphoma/leukemia in Jamaica
AssociationN=1,400Wang SS et al.(2009)· International Journal of Cancer

This PhD thesis comprises four association studies examining inherited variations in inflammatory cytokine genes and their pathogenetic role in rheumatoid arthritis (RA), multiple myeloma (MM), and B-cell non-Hodgkin's lymphoma (B-NHL). Paper I found that CHI3L1 promoter polymorphisms (rs4950928) were significantly associated with serum YKL-40 concentrations in 238 RA patients (P < 2.0e-16) and 605 controls. Paper IV reported CHI3L1 rs4950928 associated with follicular lymphoma 10-year overall survival (HRCG = 2.04, 95% CI 1.17-3.54). Papers II and III examined gene-gene interactions in MM and B-NHL risk and prognosis.

Traits studied:B-cell non-Hodgkin's lymphomaDiffuse large B-cell lymphomaFollicular lymphomaMultiple myelomaRheumatoid arthritisYKL-40 serum concentration

About CHI3L1

Chitinases catalyze the hydrolysis of chitin, which is an abundant glycopolymer found in insect exoskeletons and fungal cell walls. The glycoside hydrolase 18 family of chitinases includes eight human family members. This gene encodes a glycoprotein member of the glycosyl hydrolase 18 family. The protein lacks chitinase activity and is secreted by activated macrophages, chondrocytes, neutrophils and synovial cells. The protein is thought to play a role in the process of inflammation and tissue remodeling. [provided by RefSeq, Sep 2009]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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