rs1042838

This is a protein-altering variant in the PGR gene.

Research that mentions this SNP (7)

Genetic variations in estrogen and progesterone pathway genes in preeclampsia patients and controls in Bavaria
AssociationN=282Jutta Pretscher et al.(2021)· Archives of Gynecology and Obstetrics

Case-control study of 167 preeclampsia patients and 115 healthy Bavarian controls examining associations between hormone pathway SNPs and preeclampsia risk. Found rs10895068 (G/A genotype) in the progesterone receptor gene significantly more frequent in preeclampsia cases (16% vs 6%, P=0.023). No significant associations observed for rs1042838, rs488133, rs10046, or rs4646.

Traits studied:Hypertensive pregnancy disordersPreeclampsia
Association of the progesterone receptor gene polymorphism (PROGINS) with endometriosis: a meta-analysis
Meta-analysisN=3,321Noel Pabalan et al.(2014)· Archives of Gynecology and Obstetrics

Meta-analysis of 12 case-control studies (3,321 subjects: 1,323 cases/1,998 controls) evaluates the PROGINS polymorphism (rs1042838) in the progesterone receptor gene and endometriosis risk. Overall results showed a trend toward increased risk of endometriosis with the variant allele in homozygous/recessive models (OR 1.41-1.43, p=0.15-0.17), less pronounced in dominant/co-dominant models (OR 1.22, p=0.11-0.15). European subgroups showed consistent significant associations (OR 1.52-2.72, p=0.0008-0.03), while Brazilian studies showed protective effects (OR 0.70-0.74, p=0.54-0.61), suggesting population-specific genetic background effects.

Traits studied:Endometriosis
Associations of polymorphisms in the genes of FGFR2, FGF1, and RBFOX2 with breast cancer risk by estrogen/progesterone receptor status
AssociationN=2,416Yu‐Ling Cen et al.(2013)· Molecular Carcinogenesis

A hospital-based case-control study in rural and urban India (1,204 cases; 1,212 controls) examined genetic and lifestyle risk factors for breast cancer. Four SNPs in FGFR2 (rs1219648, rs2420946, rs2981575, rs2981582) showed positive associations with breast cancer (ORs 1.32-1.47). Additional SNPs in obesity and metabolic genes (rs374748 in FBN2, rs2922763 in HNF4G, rs2116830 in KCNMA1, rs11121832 in MTHFR, rs16886165 in MAP3K1, rs11594610 in TCF7L2, rs2274459 in MLN) were associated with increased breast cancer risk. Waist-to-hip ratio ≥0.95 showed strong association (OR 3.78; 95% CI 2.92-4.89), and women living first 20 years in rural areas showed protective effect (OR 0.77).

Traits studied:Breast cancerBreast cancer riskER+/PR+ breast cancerER/PR negative breast cancerTriple negative breast cancer
Worldwide distribution of allelic variation at the progesterone receptor locus and the incidence of female reproductive cancers
AssociationN=289Rockwell LC et al.(2012)· American Journal of Human Biology

This population genetics study genotyped 289 individuals from 21 global populations for four progesterone receptor (PGR) gene variants (rs10895068, rs561650, rs608995, and the Alu insertion in PROGINS haplotype). The study found significant positive correlations between allele frequencies and female reproductive cancer incidence: the Alu insertion showed strong correlation with breast cancer (r=0.86) and ovarian cancer (r=0.53), while the rs10895068 A variant correlated with ovarian (r=0.73) and breast cancer (r=0.57). These findings suggest PGR genetic variation may contribute to global patterns of reproductive cancer incidence.

Traits studied:Breast cancerEndometrial cancerOvarian cancerUterine cancer
Polymorphisms in estrogen metabolism and estrogen pathway genes and the risk of miscarriage
AssociationN=483Cupisti S. et al.(2009)· Archives of Gynecology and Obstetrics

Case-control study of 483 women investigating polymorphisms in estrogen metabolism and pathway genes associated with recurrent miscarriage. The CYP19A1 rs10046 C/C genotype showed significant association with increased risk of recurrent miscarriage (P=0.017), with women carrying T/T genotype experiencing multiple miscarriages in 11.7% of cases versus 3.3% for C/C genotype. No associations were found for other CYP19A1 variants (rs4646, rs700519) or ESR1 (rs3020314) and PGR (rs1042838) polymorphisms.

Traits studied:Recurrent miscarriage
Common germline polymorphisms in COMT, CYP19A1, ESR1, PGR, SULT1E1 and STS and survival after a diagnosis of breast cancer
AssociationN=4,470Miriam S. Udler et al.(2009)· International Journal of Cancer

This population-based study of 4,470 breast cancer cases from the SEARCH cohort examined associations between germline polymorphisms in 6 steroid hormone metabolism genes (COMT, CYP19A1, ESR1, PGR, SULT1E1, STS) and survival after breast cancer diagnosis. A COMT polymorphism (rs4818) showed significant association with survival in a dominant model (HR=0.80, 95% CI: 0.69-0.95, p=0.009), though this was only marginally significant after permutation adjustment (p=0.047). No significant associations were found in the other genes studied.

Traits studied:All-cause mortalityBreast cancer prognosisBreast cancer recurrenceBreast cancer survivalBreast cancer-specific mortality
Association of the progesterone receptor gene with endometrial cancer risk in a Chinese population
AssociationN=2,416Wang‐Hong Xu et al.(2009)· Cancer

A population-based case-control study of 1,204 endometrial cancer cases and 1,212 controls from Shanghai examined associations between 7 tag SNPs in the progesterone receptor (PGR) gene and endometrial cancer risk. Two SNPs in the 3' flanking region were associated with reduced cancer risk: rs11224561 CC genotype (OR=0.68, 95% CI=0.50-0.92) and rs471767 G allele (OR per allele=0.77, 95% CI=0.58-1.01). A trend of decreasing risk with increasing minor alleles was observed (P for trend=0.02).

Traits studied:Endometrial cancer

About PGR

This gene encodes a member of the steroid receptor superfamily. The encoded protein mediates the physiological effects of progesterone, which plays a central role in reproductive events associated with the establishment and maintenance of pregnancy. This gene uses two distinct promotors and translation start sites in the first exon to produce several transcript variants, both protein coding and non-protein coding. Two of the isoforms (A and B) are identical except for an additional 165 amino acids found in the N-terminus of isoform B and mediate their own response genes and physiologic effects with little overlap. [provided by RefSeq, Sep 2015]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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