rs104886202

This is a variant in the COL4A5 gene that changes a glycine to an aspartate.

ClinVar annotation

Pathogenic☆☆☆
1 submitter10 publications
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Research that mentions this SNP (2)

FunctionalN=46Unknown

This study describes a novel multiplex genomic PCR-SSCP method for detecting COL4A5 mutations causing X-linked Alport syndrome. Applied to 46 US families, the method identified 31 mutations (detection sensitivity >79%), including 3 multi-exon deletions, 26 single-base mutations, and 10 polymorphisms. Notable findings include: (1) discovery that the 2948 A→G mutation causes exon 32 skipping rather than the expected missense change S916G; (2) identification of M898V as a possibly pathogenic missense variant with an unusually mild phenotype; (3) characterization of L1649R as a common founder mutation in the US population.

Traits studied:Alport syndromeX-linked Alport syndromeend-stage renal disease
MethodsN=46Unknown

This paper describes an efficient multiplex PCR-SSCP method for screening COL4A5 mutations in Alport syndrome patients. Application to 46 U.S. families identified 29 distinct mutations (deletions, frameshifts, splice site alterations, and missense changes) with detection sensitivity >79%, including novel findings such as exon 32 skipping caused by an internal exon mutation (2948A→G) and identification of Met898Val associated with mild disease phenotype.

Traits studied:Alport syndrome

About COL4A5

This gene encodes one of the six subunits of type IV collagen, the major structural component of basement membranes. Mutations in this gene are associated with X-linked Alport syndrome, also known as hereditary nephritis. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. Alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, Aug 2010]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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