rs104893829

This is a variant in the VHL gene that changes a proline to an alanine.

ClinVar annotation

Uncertain Significance☆☆☆
1 submitter28 publications

Chuvash polycythemia; Von Hippel-Lindau syndrome (VHLS)

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Research that mentions this SNP (2)

AssociationN=469Unknown

International analysis of 469 von Hippel-Lindau (VHL) disease families identified 300 families (63%) carrying germline mutations, with 137 distinct intragenic mutations detected. Germline VHL mutations produced three distinct cancer phenotypes: renal carcinoma without pheochromocytoma (VHL type 1), renal carcinoma with pheochromocytoma (VHL type 2B), and pheochromocytoma without renal carcinoma (VHL type 2A). Identical germline mutations including delPhe76, Asn78Ser, Arg161Stop, Arg167Gln, Arg167Trp, and Leu178Pro produced consistent cancer phenotypes across Caucasian and Japanese populations.

Traits studied:Central nervous system hemangioblastomaPancreatic cystsPheochromocytomaRenal cell carcinomaRetinal angiomaVon Hippel-Lindau disease
Case reportN=93Unknown

Study of germline VHL gene mutations in 93 von Hippel-Lindau disease families detected mutations in 100% of families (vs. 39-80% in prior studies). Of 78 distinct mutations identified, 8 were complete gene deletions (10%), 23 were partial deletions (30%), and 47 were point mutations (60%). Thirteen novel mutations were reported. Strong genotype-phenotype correlations were confirmed: codon 167 mutations occurred in 46% of VHL type 2 (with pheochromocytoma) vs 3% of VHL type 1 (p=0.000002), and missense mutations were more frequent in type 2 (69%) vs type 1 (27%, p=0.003).

Traits studied:CNS hemangioblastomaspheochromocytomarenal carcinomavon Hippel-Lindau disease

About VHL

This gene encodes a component of a ubiquitination complex. The encoded protein is involved in the ubiquitination and degradation of hypoxia-inducible-factor (HIF), which is a transcription factor that plays a central role in the regulation of gene expression by oxygen. In addition to oxygen-related gene expression, this protein plays a role in many other cellular processes including cilia formation, cytokine signaling, regulation of senescence, and formation of the extracellular matrix. Variants of this gene are associated with von Hippel-Lindau syndrome, pheochromocytoma, erythrocytosis, renal cell carcinoma, and cerebellar hemangioblastoma. [provided by RefSeq, Jun 2022]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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