rs104894052

This is a variant in the SHH gene that changes a valine to an alanine.

ClinVar annotation

Pathogenic☆☆☆
2 submitters2 publications

Solitary median maxillary central incisor syndrome

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Research that mentions this SNP (1)

Relation between sonic hedgehog pathway gene polymorphisms and basal cell carcinoma development in the Polish population
AssociationN=284Aleksandra Lesiak et al.(2016)· Archives of Dermatological Research

Case-control study of 142 Polish BCC patients and 142 controls examining 22 polymorphisms in sonic hedgehog pathway genes (SHH, GLI1-4, SMO, PTCH1-2). The SHH rs104894040 T/C polymorphism CC genotype showed the strongest association with basal cell carcinoma risk (OR=87.9, p<0.0001). SHH rs104894049 A/T TT genotype (OR=10.59) and SMO rs41303402 G/A GG genotype also significantly increased BCC risk, while other investigated polymorphisms showed no significant differences between cases and controls.

Traits studied:Basal cell carcinoma

About SHH

This gene encodes a protein that is instrumental in patterning the early embryo. It has been implicated as the key inductive signal in patterning of the ventral neural tube, the anterior-posterior limb axis, and the ventral somites. Of three human proteins showing sequence and functional similarity to the sonic hedgehog protein of Drosophila, this protein is the most similar. The protein is made as a precursor that is autocatalytically cleaved; the N-terminal portion is soluble and contains the signalling activity while the C-terminal portion is involved in precursor processing. More importantly, the C-terminal product covalently attaches a cholesterol moiety to the N-terminal product, restricting the N-terminal product to the cell surface and preventing it from freely diffusing throughout the developing embryo. Defects in this protein or in its signalling pathway are a cause of holoprosencephaly (HPE), a disorder in which the developing forebrain fails to correctly separate into right and left hemispheres. HPE is manifested by facial deformities. It is also thought that mutations in this gene or in its signalling pathway may be responsible for VACTERL syndrome, which is characterized by vertebral defects, anal atresia, tracheoesophageal fistula with esophageal atresia, radial and renal dysplasia, cardiac anomalies, and limb abnormalities. Additionally, mutations in a long range enhancer located approximately 1 megabase upstream of this gene disrupt limb patterning and can result in preaxial polydactyly. [provided by RefSeq, Jul 2008]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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