rs1063192

This is a 3 prime utr variant variant in the CDKN2B gene.

GWAS Catalog Trait Associations (3)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

type 2 diabetes mellitus

Allele G
OR 0.06
p 3.0e-18
N 659,316
Large GWAS
multi-ancestry

optic disc size trait

Ramdas WD et al. A genome-wide association study of optic disc parameters. Plos Genetics 6(6):e1000978 (2010)
Allele G
OR 0.01
p 4.0e-15
N 7,360
Large GWAS
European

open-angle glaucoma

Allele T
OR 1.33
p 5.0e-11
N 7,993
Large GWAS
East Asian

ClinVar annotation

Pathogenic
3 submitters1 publication

Malignant tumor of breast; Three Vessel Coronary Disease

View on ClinVar →

Research that mentions this SNP (4)

COX2 and NOS3 gene polymorphisms in women with gestational diabetes
ReviewMaciej Tarnowski et al.(2017)· The Journal of Gene Medicine

This comprehensive review synthesizes literature on gestational diabetes mellitus (GDM), demonstrating its complex multifactorial etiology involving genetic factors (SNPs in GCKR, KCNQ1, MTNR1B, TCF7L2), epigenetic modifications (DNA methylation and microRNA expression), and alterations in microbial composition across multiple body sites. While certain SNP variants are associated with GDM phenotypes globally, genetic predisposition alone does not explain disease development; lifestyle factors can modify epigenetic signatures and microbiota composition to modulate risk. Evidence indicates genes, epigenetic alterations, and microbiota can transfer from mother to offspring with long-term health consequences.

Traits studied:Cardiovascular diseaseFetal macrosomiaGestational diabetes mellitusHyperglycemiaHyperlipidemiaHypoglycemiaImpaired insulin secretionInflammatory conditionsInsulin resistanceMetabolic syndromeObesityPreeclampsiaType 2 diabetes
Genetic Variants in MicroRNAs and Their Binding Sites Are Associated with the Risk of Parkinson Disease
AssociationN=233Ghanbari M. et al.(2016)· Human Mutation

Case-control study of 120 Greek POAG patients and 113 controls examining the association of miR182 rs76481776 and CDKN2B rs3217992 polymorphisms with primary open-angle glaucoma. The T allele of rs76481776 was significantly associated with increased POAG risk (OR: 2.62, 95% CI: 1.56-4.39, p=0.0002), as was the A allele of rs3217992 (OR: 1.72, 95% CI: 1.18-2.49, p=0.005). Both variants are proposed to affect miRNA-mediated regulation and increase glaucoma susceptibility in the Greek population.

Traits studied:Primary open-angle glaucoma (POAG)
Genome‐wide association study of theta band event‐related oscillations identifies serotonin receptor geneHTR7influencing risk of alcohol dependence
AssociationN=2,159Mark Zlojutro et al.(2011)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This genome-wide association study identified four genes influencing theta band event-related oscillations, a heritable neuroelectrical trait associated with alcohol dependence. The strongest association for alcohol dependence risk was rs7916403 in serotonin receptor gene HTR7 on chromosome 10q23 (combined P = 1.53 × 10⁻⁴), with a recessive effect (OR = 1.32–1.37, P = 0.031–0.042). Other significant markers included rs4907240 in ARID5A (P = 3.68 × 10⁻⁶), rs13831 in GNAS1, and non-synonymous rs2294015 in ANXA13.

Traits studied:Alcohol dependenceTheta band event-related oscillations
Strong association of common variants in the CDKN2A/CDKN2B region with type 2 diabetes in French Europids
AssociationN=3,093Duesing K. et al.(2008)· Diabetologia

A replication study of genome-wide association findings in the CDKN2A/CDKN2B region on chromosome 9p in 3,093 French Europids (1,455 cases, 1,638 controls). The study confirms a strong association of rs10811661 with type 2 diabetes (p=3.8×10⁻⁷, OR 1.43 [95% CI 1.24-1.64]) and identifies rs3218018 as a secondary signal surviving Bonferroni correction (p=0.002). The rs564398 variant did not reach significance in this population.

Traits studied:Type 2 diabetes

About CDKN2B

This gene lies adjacent to the tumor suppressor gene CDKN2A in a region that is frequently mutated and deleted in a wide variety of tumors. This gene encodes a cyclin-dependent kinase inhibitor, which forms a complex with CDK4 or CDK6, and prevents the activation of the CDK kinases, thus the encoded protein functions as a cell growth regulator that controls cell cycle G1 progression. The expression of this gene was found to be dramatically induced by TGF beta, which suggested its role in the TGF beta induced growth inhibition. Two alternatively spliced transcript variants of this gene, which encode distinct proteins, have been reported. [provided by RefSeq, Jul 2008]

View all CDKN2B variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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