rs13330176

This variant is located in the LOC124903741 gene.

GWAS Catalog Trait Associations (6)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

monocyte count

Vuckovic D et al. The Polygenic and Monogenic Basis of Blood Traits and Diseases. Cell 182(5):1214-1231.e11 (2020)
Allele A
OR 0.06
p 5.0e-95
N 408,112
Large GWAS
European

level of T-cell leukemia/lymphoma protein 1A in blood

Allele A
OR 0.07
p 5.0e-36
N 47,745
Large GWAS
European

B-cell receptor CD22 level

Allele A
OR 0.07
p 2.0e-28
N 47,745
Large GWAS
European

immunoglobulin lambda-like polypeptide 1 measurement

Pietzner M et al. Mapping the proteo-genomic convergence of human diseases. Science (new York, N.y.) 374(6569):eabj1541 (2021)
Allele A
OR 0.14
p 2.0e-19
N 10,708
Large GWAS
European

blood protein amount

Allele A
OR 0.05
p 7.0e-14
N 47,745
Large GWAS
European

rheumatoid arthritis

Allele A
OR 1.12
p 1.0e-12
N 79,799
Large GWAS
multi-ancestry
Allele A
OR 1.12
p 2.0e-8
N 55,089
Large GWAS
multi-ancestry
Allele A
OR 1.15
p 5.0e-9
N 43,327
Large GWAS
European
Laufer VA et al. Genetic influences on susceptibility to rheumatoid arthritis in African-Americans. Human Molecular Genetics 28(5):858-874 (2019)
Allele A
OR
β 0.075
p 2.0e-10
N 2,308
Large GWAS
multi-ancestry

Research that mentions this SNP (1)

Reduction of CD83 Expression on B Cells and the Genetic Basis for Rheumatoid Arthritis: Comment on the Article by Thalayasingam et al
FunctionalN=16Yumi Tsuchida et al.(2018)· Arthritis &amp; Rheumatology

This functional study integrates epigenomic datasets (ATAC-seq, Hi-C, ChIP-seq, RNA-seq) from fibroblast-like synoviocytes (FLS) to map the functional relevance of 101 fine-mapped rheumatoid arthritis GWAS associations. FLS regulatory elements account for 24% of RA heritability, and the study assigns putative target genes to RA risk loci, identifying TNFAIP3, IFNAR1, CDK6, RBPJ and others as disease-relevant genes. TNF stimulation reveals dynamic chromatin interactions and differential gene expression at RA-associated regulatory regions.

Traits studied:Rheumatoid arthritis

This variant is in our database but has no known associations or PRS memberships yet.

Gene information from NCBI Gene. Variant classifications from ClinVar.

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