rs165774

This is a downstream gene variant variant in the ARVCF gene.

Research that mentions this SNP (6)

A candidate gene study of risk for dementia in older, postmenopausal women: Results from the Women's Health Initiative Memory Study
AssociationN=2,857Ira Driscoll et al.(2019)· International Journal of Geriatric Psychiatry

A candidate gene association study of dementia risk in 2,857 older postmenopausal women from the Women's Health Initiative Memory Study examining 96 SNPs across five genes (APOE/TOMM40, BDNF, COMT, SORL1, KIBRA). The APOE/TOMM40 locus showed the strongest association (rs157582: OR=1.64, p=2.4×10⁻⁸ for probable dementia), with additional significant associations in COMT (rs737865), BDNF (rs1491850), and KIBRA (rs4320284, rs2241368, rs244904). Results support APOE/TOMM40 as a dementia risk locus and extend associations to COMT, BDNF, and KIBRA genes.

Traits studied:Alzheimer's diseaseCognitive impairmentMemoryMild cognitive impairmentProbable dementia
Association of copy number polymorphisms at the promoter and translated region of COMT with Japanese patients with schizophrenia
AssociationN=6,309Ryoko Higashiyama et al.(2016)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A two-stage Japanese case-control study investigating the association of COMT gene SNPs and copy number variants (CNVs) with schizophrenia. Stage 1 included 513 schizophrenia patients and 705 controls; stage 2 replicated findings in 1,854 patients and 2,137 controls. The intronic SNP rs165774 and promoter region CNV6, exon CNV8, and CNV9 showed strong associations with schizophrenia in stage 1. In stage 2 replication, rs165774, CNV6, and CNV8 maintained significant associations, suggesting that low-frequency CNVs and small CNVs (<30 kb) in COMT are genetic risk factors for schizophrenia.

Traits studied:Schizophrenia
Common germline polymorphisms in COMT, CYP19A1, ESR1, PGR, SULT1E1 and STS and survival after a diagnosis of breast cancer
AssociationN=4,470Miriam S. Udler et al.(2009)· International Journal of Cancer

This population-based study of 4,470 breast cancer cases from the SEARCH cohort examined associations between germline polymorphisms in 6 steroid hormone metabolism genes (COMT, CYP19A1, ESR1, PGR, SULT1E1, STS) and survival after breast cancer diagnosis. A COMT polymorphism (rs4818) showed significant association with survival in a dominant model (HR=0.80, 95% CI: 0.69-0.95, p=0.009), though this was only marginally significant after permutation adjustment (p=0.047). No significant associations were found in the other genes studied.

Traits studied:All-cause mortalityBreast cancer prognosisBreast cancer recurrenceBreast cancer survivalBreast cancer-specific mortality
New genetic evidence for involvement of the dopamine system in migraine with aura
AssociationN=1,300Unda Todt et al.(2009)· Human Genetics

This case-control association study of 650 German migraine with aura (MA) patients and 650 controls tested 53 variants across 10 dopaminergic system genes. Three SNPs in the dopamine-beta hydroxylase (DBH), dopamine transporter (SLC6A3), and dopamine D2 receptor (DRD2) genes showed significant associations with MA. After gene-wide correction, rs2097629 in DBH (OR=0.77, p=0.0012) and rs40184 in SLC6A3 (OR=0.81, p=0.0082) remained significant, with supporting evidence from 2,937 British controls. These findings provide genetic evidence for dopaminergic system involvement in MA pathogenesis.

Traits studied:MigraineMigraine with aura
Sexually dimorphic effects of four genes (COMT, SLC6A2, MAOA, SLC6A4) in genetic associations of ADHD: A preliminary study
AssociationN=474Joseph Biederman et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This family-based association study investigated four ADHD candidate genes (COMT, SLC6A2, MAOA, SLC6A4) for sexually dimorphic genetic effects in 474 ADHD-affected offspring. The Met allele of COMT Val158Met showed stronger association in males (OR=1.42, p=0.003) but not females (p=0.936), and when combined with prior data showed significant gender effects (p=0.007). SLC6A2 and MAOA also showed sex-stratified associations, supporting the hypothesis that ADHD risk genes have sexually dimorphic effects.

Traits studied:Attention-Deficit/Hyperactivity Disorder (ADHD)
Examination of association to autism of common genetic variationin genes related to dopamine
AssociationN=403Anderson BM et al.(2008)· Autism Research

This association study examined 28 SNPs across 14 dopamine pathway candidate genes in 403 families with autism to test the hypothesis that common genetic variation in dopamine metabolism contributes to autism susceptibility. While rs2239535 (YWHAB, chromosome 20) showed the strongest nominally significant association (p=0.008), this did not remain significant after correction for multiple comparisons, and no significant gene-gene interactions were detected using Multifactor Dimensionality Reduction analysis.

Traits studied:AutismAutism Spectrum Disorder (ASD)

About ARVCF

Armadillo Repeat gene deleted in Velo-Cardio-Facial syndrome (ARVCF) is a member of the catenin family. This family plays an important role in the formation of adherens junction complexes, which are thought to facilitate communication between the inside and outside environments of a cell. The ARVCF gene was isolated in the search for the genetic defect responsible for the autosomal dominant Velo-Cardio-Facial syndrome (VCFS), a relatively common human disorder with phenotypic features including cleft palate, conotruncal heart defects and facial dysmorphology. The ARVCF gene encodes a protein containing two motifs, a coiled coil domain in the N-terminus and a 10 armadillo repeat sequence in the midregion. Since these sequences can facilitate protein-protein interactions ARVCF is thought to function in a protein complex. In addition, ARVCF contains a predicted nuclear-targeting sequence suggesting that it may have a function as a nuclear protein. [provided by RefSeq, Jun 2010]

View all ARVCF variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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