rs174537
This is a downstream gene variant variant in the MYRF gene.
▶GWAS Catalog Trait Associations (71)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (71)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
level of Phosphatidylcholine (18:0_20:4) in blood serum
polyunsaturated fatty acids to total fatty acids percentage
level of Phosphatidylcholine (18:1_20:4) in blood serum
level of Phosphatidylcholine (16:0_20:4) in blood serum
gamma-linolenic acid measurement
free cholesterol:total lipids ratio, blood VLDL cholesterol amount
cholesterol:total lipids ratio, blood VLDL cholesterol amount
phospholipids in small LDL measurement
triglyceride measurement
free cholesterol to total lipids in medium VLDL percentage
▶Research that mentions this SNP (2)
▶The more from East-Asian, the better: risk prediction of colorectal cancer risk by GWAS-identified SNPs among JapaneseAssociationN=2,768Makiko Abe et al.(2017)· Journal of Cancer Research and Clinical Oncology
This case-control study in Japanese population evaluated CRC risk prediction models using SNPs identified in European and East Asian GWAS. An 11-SNP model combining 6 European-identified SNPs (rs6983267, rs4779584, rs4444235, rs9929218, rs10936599, rs16969681) with 5 East Asian-identified SNPs (rs704017, rs11196172, rs10774214, rs647161, rs2423279) showed significantly improved discrimination capacity compared to a 6-SNP model alone (derivation AUC 0.6392 vs 0.6125, P=0.0039; replication AUC 0.5695 vs 0.5310, P=0.0018), with cumulative risk at age 80 estimated at 13% in high-risk versus 6% in low-risk genetic groups.
▶A single nucleotide polymorphism in the FADS1/FADS2 gene is associated with plasma lipid profiles in two genetically similar Asian ethnic groups with distinctive differences in lifestyleAssociationN=22,207Kazuhiro Nakayama et al.(2010)· Human Genetics
A replication study in 21,004 Japanese and 1,203 Mongolian individuals demonstrated that rs174547 in FADS1/FADS2 is associated with plasma lipid profiles in Asian populations. In Japanese, the C allele was significantly associated with increased triglycerides (P=1.5×10⁻⁶, β=0.04 mg/dl per allele) and decreased HDL-C (P=0.03), while in Mongolians, the C allele was strongly associated with decreased LDL-C (P=2.6×10⁻⁶, β=-5.7 mg/dl per allele). The variable effects across populations despite similar genetic backgrounds suggest gene-environment interaction with dietary polyunsaturated fatty acid intake.
About MYRF
This gene encodes a transcription factor that is required for central nervous system myelination and may regulate oligodendrocyte differentiation. It is thought to act by increasing the expression of genes that effect myelin production but may also directly promote myelin gene expression. Loss of a similar gene in mouse models results in severe demyelination. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2014]
View all MYRF variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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