rs1800734
This is a regulatory region variant variant in the MLH1 gene.
▶GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
colorectal cancer
serum gamma-glutamyl transferase measurement
▶ClinVar annotation
Colorectal cancer, hereditary nonpolyposis, type 2 (LYNCH2); Hereditary cancer-predisposing syndrome; Hereditary nonpolyposis colorectal neoplasms; Lynch syndrome; Mismatch repair cancer syndrome 1 (MMRCS1); Muir-Torré syndrome (MRTES); not specified
View on ClinVar →▶Research that mentions this SNP (4)
▶Association between MutL homolog 1 polymorphisms and the risk of colorectal cancer: a meta-analysisMeta-analysisN=69,183Haiyan Chen et al.(2015)· Journal of Cancer Research and Clinical Oncology
Meta-analysis of 24 case-control studies examining associations between MLH1 gene polymorphisms and colorectal cancer (CRC) risk. The study found that rs63750447 (MLH1 c.1151T>A) was significantly associated with increased CRC risk (OR 2.28-2.29, P<0.001), while rs1800734 (c.-93G>A) and rs1799977 (c.655A>G) showed no significant associations with CRC susceptibility.
▶Mismatch Repair Gene Polymorphisms and Association with Lung Cancer DevelopmentAssociationN=933Slováková P. et al.(2014)· Advances in Experimental Medicine and Biology
This case-control study examined two mismatch repair gene polymorphisms (hMLH1 rs1800734 and hMSH2 rs2303425) in 422 Slovak lung cancer patients and up to 511 controls. The rs1800734 A allele showed decreased lung cancer risk in the dominant model (OR=1.40, p=0.01), particularly in women (OR=2.00, p=0.006), while the rs2303425 CC genotype increased risk in the recessive model (OR=2.28, p=0.024). The combined GGCC genotype showed markedly elevated risk (OR=3.08, p=0.03; OR=11.56 in women, p=0.005).
▶MLH1 −93G>A promoter polymorphism and risk of mismatch repair deficient colorectal cancerAssociationN=296Allan JM et al.(2008)· International Journal of Cancer
This study characterized mismatch repair (MMR) system defects in 96 malignant astrocytomas (20 grade II, 19 grade III, 57 grade IV glioblastomas). Loss of MLH1 expression was associated with MLH1 promoter hypermethylation and the MLH1 -93G>A polymorphism (rs1800734). MSH6 loss was associated with longer overall survival in high-grade astrocytomas treated with radiotherapy alone (HR=2.17, 95% CI 1.14-4.11, p=0.015) but not in those treated with radiotherapy plus chemotherapy. Only 5% of tumors were microsatellite-instable, and germline MMR mutations were rare.
▶Evidence for heritable predisposition to epigenetic silencing of MLH1AssociationN=167Huiping Chen et al.(2007)· International Journal of Cancer
This study analyzed mismatch repair (MMR) system defects in 96 malignant astrocytomas by examining MLH1, MSH2, and MSH6 protein expression, promoter methylation, and gene mutations. The MLH1 -93G>A polymorphism (rs1800734) AA genotype was significantly associated with glioblastomas (12% vs 4% in controls, P=0.017) and with MLH1 promoter hypermethylation and loss of expression. Loss of MSH6 expression was associated with poor overall survival in high-grade astrocytoma patients (HR=1.76, 95% CI 1.01-3.07, P=0.045).
About MLH1
The protein encoded by this gene can heterodimerize with mismatch repair endonuclease PMS2 to form MutL alpha, part of the DNA mismatch repair system. When MutL alpha is bound by MutS beta and some accessory proteins, the PMS2 subunit of MutL alpha introduces a single-strand break near DNA mismatches, providing an entry point for exonuclease degradation. The encoded protein is also involved in DNA damage signaling and can heterodimerize with DNA mismatch repair protein MLH3 to form MutL gamma, which is involved in meiosis. This gene was identified as a locus frequently mutated in hereditary nonpolyposis colon cancer (HNPCC). [provided by RefSeq, Aug 2017]
View all MLH1 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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