rs1800734

This is a regulatory region variant variant in the MLH1 gene.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

colorectal cancer

Allele A
OR 1.15
p 4.0e-18
N 79,865
Large GWAS
European

serum gamma-glutamyl transferase measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.02
p 1.0e-9
N 355,690
Major Consortium StudyLarge GWAS
multi-ancestry

ClinVar annotation

Benign★★★★
13 submitters3 publications

Colorectal cancer, hereditary nonpolyposis, type 2 (LYNCH2); Hereditary cancer-predisposing syndrome; Hereditary nonpolyposis colorectal neoplasms; Lynch syndrome; Mismatch repair cancer syndrome 1 (MMRCS1); Muir-Torré syndrome (MRTES); not specified

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Research that mentions this SNP (4)

Association between MutL homolog 1 polymorphisms and the risk of colorectal cancer: a meta-analysis
Meta-analysisN=69,183Haiyan Chen et al.(2015)· Journal of Cancer Research and Clinical Oncology

Meta-analysis of 24 case-control studies examining associations between MLH1 gene polymorphisms and colorectal cancer (CRC) risk. The study found that rs63750447 (MLH1 c.1151T>A) was significantly associated with increased CRC risk (OR 2.28-2.29, P<0.001), while rs1800734 (c.-93G>A) and rs1799977 (c.655A>G) showed no significant associations with CRC susceptibility.

Traits studied:Colorectal cancer (CRC)
Mismatch Repair Gene Polymorphisms and Association with Lung Cancer Development
AssociationN=933Slováková P. et al.(2014)· Advances in Experimental Medicine and Biology

This case-control study examined two mismatch repair gene polymorphisms (hMLH1 rs1800734 and hMSH2 rs2303425) in 422 Slovak lung cancer patients and up to 511 controls. The rs1800734 A allele showed decreased lung cancer risk in the dominant model (OR=1.40, p=0.01), particularly in women (OR=2.00, p=0.006), while the rs2303425 CC genotype increased risk in the recessive model (OR=2.28, p=0.024). The combined GGCC genotype showed markedly elevated risk (OR=3.08, p=0.03; OR=11.56 in women, p=0.005).

Traits studied:Lung cancer
MLH1 −93G&gt;A promoter polymorphism and risk of mismatch repair deficient colorectal cancer
AssociationN=296Allan JM et al.(2008)· International Journal of Cancer

This study characterized mismatch repair (MMR) system defects in 96 malignant astrocytomas (20 grade II, 19 grade III, 57 grade IV glioblastomas). Loss of MLH1 expression was associated with MLH1 promoter hypermethylation and the MLH1 -93G>A polymorphism (rs1800734). MSH6 loss was associated with longer overall survival in high-grade astrocytomas treated with radiotherapy alone (HR=2.17, 95% CI 1.14-4.11, p=0.015) but not in those treated with radiotherapy plus chemotherapy. Only 5% of tumors were microsatellite-instable, and germline MMR mutations were rare.

Traits studied:Anaplastic astrocytomaGlioblastomaLow-grade astrocytomaMalignant astrocytomasOverall survival in astrocytomas
Evidence for heritable predisposition to epigenetic silencing of MLH1
AssociationN=167Huiping Chen et al.(2007)· International Journal of Cancer

This study analyzed mismatch repair (MMR) system defects in 96 malignant astrocytomas by examining MLH1, MSH2, and MSH6 protein expression, promoter methylation, and gene mutations. The MLH1 -93G>A polymorphism (rs1800734) AA genotype was significantly associated with glioblastomas (12% vs 4% in controls, P=0.017) and with MLH1 promoter hypermethylation and loss of expression. Loss of MSH6 expression was associated with poor overall survival in high-grade astrocytoma patients (HR=1.76, 95% CI 1.01-3.07, P=0.045).

Traits studied:Anaplastic astrocytomasGlioblastomasLow-grade astrocytomasMalignant astrocytomasMicrosatellite instabilityMismatch repair dysfunctionOverall survival in brain tumors

About MLH1

The protein encoded by this gene can heterodimerize with mismatch repair endonuclease PMS2 to form MutL alpha, part of the DNA mismatch repair system. When MutL alpha is bound by MutS beta and some accessory proteins, the PMS2 subunit of MutL alpha introduces a single-strand break near DNA mismatches, providing an entry point for exonuclease degradation. The encoded protein is also involved in DNA damage signaling and can heterodimerize with DNA mismatch repair protein MLH3 to form MutL gamma, which is involved in meiosis. This gene was identified as a locus frequently mutated in hereditary nonpolyposis colon cancer (HNPCC). [provided by RefSeq, Aug 2017]

View all MLH1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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