rs2066786

This variant is located in the RFC1 gene.

ClinVar annotation

Benign★★★
3 submitters1 publication

Cerebellar ataxia with neuropathy and bilateral vestibular areflexia syndrome; not provided; RFC1-related disorder

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Research that mentions this SNP (2)

SNP–SNP interactions between DNA repair genes were associated with breast cancer risk in a Korean population
AssociationN=1,659Wonshik Han et al.(2012)· Cancer

This dissertation investigated sex differences in melanoma using Connecticut Tumor Registry and Minnesota Skin Health study cohorts. Multiple SNPs in DNA repair genes (RFC1, ERCC4, ERCC5, ERCC6, PARP1, FBRSL1) and immune response genes (SMAD3, CXCL8, IFNγ, IL-17A) were associated with Breslow thickness and interacted with UV exposure to modify melanoma progression. Notably, rs4253114 (ERCC6) was the only SNP significant in both male and female sex-stratified analyses. UV exposure showed opposite effects between sexes: inversely associated with male mortality (HR 0.5-0.9 range) but not associated with female survival; skin awareness reduced Breslow thickness in females but not males.

Traits studied:Breslow thicknessMelanomaMelanoma progressionMelanoma survival
MGMT −535G>T polymorphism is associated with prognosis for patients with metastatic colorectal cancer treated with oxaliplatin-based chemotherapy
AssociationN=94Jee Hyun Park et al.(2010)· Journal of Cancer Research and Clinical Oncology

This candidate gene association study examined 16 DNA repair gene polymorphisms in 94 patients with metastatic colorectal cancer treated with oxaliplatin-based chemotherapy. The MGMT -535G>T polymorphism (rs1625649) was found to be significantly associated with progression-free survival (PFS) (p=0.076 in univariate analysis), with TT genotype showing improved prognosis compared to GG/GT genotypes (HR=3.137, p=0.005 in multivariate analysis). Several other polymorphisms in DNA repair genes were evaluated for associations with chemotherapy response and survival outcomes.

Traits studied:Chemotherapy response to oxaliplatin-based treatmentMetastatic colorectal cancerOverall survivalProgression-free survival

About RFC1

This gene encodes the large subunit of replication factor C, a five subunit DNA polymerase accessory protein, which is a DNA-dependent ATPase required for eukaryotic DNA replication and repair. The large subunit acts as an activator of DNA polymerases, binds to the 3' end of primers, and promotes coordinated synthesis of both strands. It may also have a role in telomere stability. Alternatively spliced transcript variants encoding different isoforms have been noted for this gene. [provided by RefSeq, Mar 2011]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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