rs2073438

This is a regulatory region variant variant in the ALOX12 gene.

ClinVar annotation

Benign★★★
2 submitters1 publication
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Research that mentions this SNP (3)

Genetic variation in the lipoxygenase pathway and risk of colorectal neoplasia
AssociationN=5,618Sarah E. Kleinstein et al.(2013)· Genes, Chromosomes and Cancer

This case-control study investigated associations between genetic polymorphisms in lipoxygenase pathway genes (ALOX5, FLAP, ALOX12, ALOX15) and colorectal cancer risk across three US populations (colon cancer: 1424 cases/1780 controls; rectal cancer: 583 cases/775 controls; adenoma: 485 cases/578 controls). The ALOX5 VNTR variant was associated with significantly lower rectal cancer risk (OR>5/≥5 vs 5/5 = 0.42, p=0.01). Four SNPs (rs17239025, rs2073438, rs4796535, rs2619112) were associated with rectal cancer risk at p≤0.05. Genetic variability in FLAP and ALOX15 modified the protective effect of NSAID use against colorectal neoplasia, particularly for rectal cancer.

Traits studied:Colon cancerColorectal adenomaColorectal cancerColorectal neoplasiaRectal cancer
Genetic variation in the carbonyl reductase 3 gene confers risk of type 2 diabetes and insulin resistance: a potential regulator of adipogenesis
AssociationN=8,075Chang YC et al.(2012)· Journal of Molecular Medicine

This case-control association study identified rs10483032 in the CBR3 gene as associated with type 2 diabetes and insulin resistance in Chinese populations (combined OR = 1.29, 95% CI = 1.14-1.47, P < 0.0001). The association was replicated in multiple Chinese samples and validated in the FUSION GWAS. Functional studies demonstrated CBR3 expression increases during adipocyte differentiation, and CBR3 knockdown enhanced adipogenesis, suggesting the risk variant modulates type 2 diabetes susceptibility through effects on adipogenesis and insulin sensitivity.

Traits studied:Fasting glucoseFasting insulinHOMA-IRInsulin resistanceType 2 diabetes
Polymorphisms in the human ALOX12 and ALOX15 genes are associated with peak bone mineral density in Chinese nuclear families
AssociationN=1,260Xiao WJ et al.(2012)· Osteoporosis International

This family-based association study genotyped 10 SNPs in ALOX12 and ALOX15 genes in 1,260 individuals from 401 Chinese nuclear families and tested their association with peak bone mineral density (BMD) using the quantitative transmission disequilibrium test (QTDT). rs916055 in ALOX15 was significantly associated with lumbar spine BMD (p=0.027) and rs312470 in ALOX12 was significantly associated with femoral neck BMD (p=0.029-0.036), with additional associations for rs2292350 in ALOX12 at multiple sites. The results suggest that genetic polymorphisms in ALOX12 and ALOX15 contribute to variations in peak BMD in Chinese women.

Traits studied:Femoral neck BMDLumbar spine BMDPeak bone mineral densityTotal hip BMD

About ALOX12

This gene encodes a member of the lipoxygenase family of proteins. The encoded enzyme acts on different polyunsaturated fatty acid substrates to generate bioactive lipid mediators including eicosanoids and lipoxins. The encoded enzyme and its reaction products have been shown to regulate platelet function. Elevated expression of this gene has been observed in pancreatic islets derived from human diabetes patients. Allelic variants in this gene may be associated with susceptibility to toxoplasmosis. Multiple pseudogenes of this gene have been identified in the human genome. [provided by RefSeq, Aug 2017]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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