rs2251746

This is a intron variant variant in the FCER1A gene.

GWAS Catalog Trait Associations (3)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

serum IgE amount

Granada M et al. A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study. The Journal of Allergy and Clinical Immunology 129(3):840-845.e21 (2012)
Allele C
OR
β 0.090
p 5.0e-26
N 6,819
CohortLarge GWAS
European
Daya M et al. Multiethnic genome-wide and HLA association study of total serum IgE level. The Journal of Allergy and Clinical Immunology 148(6):1589-1595 (2021)
Allele C
OR
p 1.0e-17
N 21,901
Large GWAS
multi-ancestry
Allele C
OR 19.20
p 2.0e-20
N 1,530
Large GWAS
European

immunoglobulin E measurement

Pietzner M et al. Mapping the proteo-genomic convergence of human diseases. Science (new York, N.y.) 374(6569):eabj1541 (2021)
Allele T
OR 0.13
p 4.0e-18
N 10,708
Large GWAS
European

Research that mentions this SNP (3)

FcɛR1α gene polymorphism shows association with high IgE and anti‐FcɛR1α in Chronic Rhinosinusitis with Nasal Polyposis
AssociationN=282Sajad A. Dar et al.(2018)· Journal of Cellular Biochemistry

A retrospective cohort study of 282 patients with severe uncontrolled asthma treated with omalizumab, mepolizumab, or benralizumab for 12 months evaluated genetic variants in 11 genes (IL1RL1, IL5, GATA2, IKZF2, RAD50, C3, FCER1A, FCER1B, FCGR2A, FCGR2B, FCGR3A) as predictors of response. Key findings: FCGR2B rs3219018-C, GATA2 rs4857855-T, and FCGR2A rs1801274-AG associated with improved lung function in omalizumab (p=0.052, 0.052, 0.012); IL1RL1 rs17026974-AG/GG associated with reduced exacerbations in omalizumab (p=0.040, 0.041); FCER1B rs569108-AA and FCGR2A rs1801274-GG associated with corticosteroid reduction in benralizumab; FCER1A rs2427837-A associated with improved lung function in mepolizumab (p=0.023).

Traits studied:Exacerbation reductionLung function improvementOral corticosteroid reductionResponse to benralizumabResponse to mepolizumabResponse to omalizumabSevere uncontrolled asthma
Allergy and glioma risk: Test of association by genotype
AssociationN=5,548Sara E. Dobbins et al.(2011)· International Journal of Cancer

Case-control genome-wide association study of 1,878 glioma cases and 3,670 controls examining associations between asthma/allergy susceptibility variants and glioma risk. SNP rs7216389 at 17q21 (ORMDL3) was significantly associated with increased glioma risk (OR=1.10, 95% CI: 1.01-1.19, P=0.022), providing genetic evidence for a positive association between asthma susceptibility and glioma risk, contrary to epidemiological studies reporting inverse associations.

Traits studied:AsthmaAtopic dermatitisAtopy/AllergyEczemaEosinophil countGliomaIgE levels
FcεRIα gene –18483A&gt;C polymorphism affects transcriptional activity through YY1 binding
FunctionalDaniel P. Potaczek et al.(2009)· Immunogenetics

This functional study demonstrates that the FcεRIα gene -18483A>C polymorphism (rs2494262) affects transcriptional activity through preferential YY1 transcription factor binding to the -18483C allele, resulting in lower transcriptional activity compared to the -18483A allele. The effect was confirmed via electrophoretic mobility shift assay, chromatin immunoprecipitation, luciferase reporter assays across multiple cell lines, and YY1 knockdown experiments.

Traits studied:Allergic disordersAspirin-induced urticariaAtopic dermatitisSerum IgE levels

About FCER1A

The immunoglobulin epsilon receptor (IgE receptor) is the initiator of the allergic response. When two or more high-affinity IgE receptors are brought together by allergen-bound IgE molecules, mediators such as histamine that are responsible for allergy symptoms are released. This receptor is comprised of an alpha subunit, a beta subunit, and two gamma subunits. The protein encoded by this gene represents the alpha subunit. [provided by RefSeq, Aug 2011]

View all FCER1A variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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