rs2274567

This is a variant in the CR1 gene that changes a histidine to an arginine.

ClinVar annotation

Benign
2 submitters3 publications

CR1-related disorder; Malaria, severe, resistance to

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Research that mentions this SNP (3)

ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology
AssociationN=2,666Peter T. Nelson et al.(2014)· Acta Neuropathologica

This is the first genome-wide association study (GWAS) of hippocampal sclerosis of aging (HS-Aging), a common neuropathology in elderly individuals. The study analyzed 363 HS-Aging cases and 2,303 controls from multiple autopsy cohorts and identified that rs704178:G in the ABCC9 gene (ATP-binding cassette, sub-family C member 9, also known as sulfonylurea receptor 2) is associated with HS-Aging pathology with genome-wide significance (p = 1.4 × 10⁻⁹, OR = 2.13 in recessive mode). The authors also confirmed previously identified associations with rs5848 (GRN, OR = 1.16) and rs1990622 (near TMEM106B, OR = 1.22). Additionally, sulfonylurea drug exposure in elderly subjects (n = 624, age ≥85 at death) was associated with increased HS-Aging risk (p = 0.03), identifying a potentially targetable dementia risk factor.

Traits studied:HS-Aging pathologyHippocampal sclerosis of aging
Replication of Genome‐Wide association studies (GWAS) loci for sleep in the British G1219 cohort
AssociationN=2,666Michael J. Parsons et al.(2013)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Genome-wide association study of hippocampal sclerosis of aging (HS-Aging) pathology in 363 cases and 2,303 neuropathologically confirmed controls found that rs704178 in the ABCC9 gene (sulfonylurea receptor 2) was significantly associated with HS-Aging (p = 1.4 × 10⁻⁹, OR = 2.13 recessive). Sulfonylurea drug exposure was also associated with HS-Aging risk (p = 0.03) in elderly individuals age 85+. Previously reported SNPs rs5848 (GRN) and rs1990622 (TMEM106B) showed trends toward association with similar effect sizes.

Traits studied:Alzheimer's disease pathologyHippocampal TDP-43 pathologyHippocampal sclerosis of aging (HS-Aging) pathology
Maternal coding variants in complement receptor 1 and spontaneous idiopathic preterm birth
AssociationN=1,230Jude J. McElroy et al.(2013)· Human Genetics

This whole-exome sequencing study identified maternal coding variants in complement and coagulation pathway genes contributing to spontaneous idiopathic preterm birth (PTB). Variants in the complement receptor 1 gene (CR1) showed significant association with PTB in a Finnish case-control cohort (237 cases, 328 controls), with the strongest association at rs6691117 (p=6.91e-5, OR=1.71). Additional intronic CR1 variants rs10429953 (OR=1.93) and rs10429943 (OR=1.84) also showed significant associations, suggesting the complement/coagulation cascade pathway plays an important role in PTB pathophysiology.

Traits studied:Preterm birthSpontaneous idiopathic preterm birth

About CR1

This gene is a member of the receptors of complement activation (RCA) family and is located in the 'cluster RCA' region of chromosome 1. The genome is polymorphic at this locus with allele-specific splice variants encoding different isoforms, based on the presence/absence of long homologous repeats (LHRs). The gene encodes a monomeric single-pass type I membrane glycoprotein found on erythrocytes, leukocytes, glomerular podocytes, and splenic follicular dendritic cells. The Knops blood group system is a system of antigens located on this protein. The protein mediates cellular binding to particles and immune complexes that have activated complement. Decreases in expression of this protein and/or mutations in this gene have been associated with gallbladder carcinomas, mesangiocapillary glomerulonephritis, systemic lupus erythematosus, sarcoidosis and Alzheimer's disease. Mutations in this gene have also been associated with a reduction in Plasmodium falciparum rosetting, conferring protection against severe malaria. [provided by RefSeq, May 2020]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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