rs3025053

This is a downstream gene variant variant in the VEGFA gene.

GWAS Catalog Trait Associations (3)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

triglyceride measurement

Sinnott-Armstrong N et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics 53(2):185-194 (2021)
Allele A
OR 0.03
p 4.0e-12
N 355,577
Major Consortium StudyLarge GWAS
multi-ancestry
Koskeridis F et al. Pleiotropic genetic architecture and novel loci for C-reactive protein levels. Nature Communications 13(1):6939 (2022)
Allele A
OR 0.02
p 1.0e-8
N 361,194
Large GWAS
European

BMI-adjusted waist circumference

Allele A
OR 0.03
p 8.0e-12
N 219,872
Major Consortium StudyLarge GWAS
European

BMI-adjusted waist-hip ratio

Allele A
OR 0.03
p 3.0e-13
N 219,872
Major Consortium StudyLarge GWAS
European

Research that mentions this SNP (2)

Evaluation of genes involved in limb development, angiogenesis, and coagulation as risk factors for congenital limb deficiencies
AssociationN=1,369Marilyn L. Browne et al.(2012)· American Journal of Medical Genetics Part A

Population-based case-control study of 389 infants with congenital limb deficiencies and 980 controls examining 132 SNPs in 20 candidate genes involved in limb development, angiogenesis, and coagulation. Among non-Hispanic white infants, SNPs in FGF10 (rs10805683: OR=1.99, 95% CI=1.43-2.77; rs13170645: OR=2.37, 95% CI=1.48-3.78) showed significant associations with limb deficiencies after multiple testing correction, with supportive evidence for genes including EN1, WNT7A, CYP26B1, SHH, and TBX5.

Traits studied:Congenital limb deficienciesIntercalary limb deficienciesLongitudinal limb deficienciesTransverse limb deficiencies
Effect of polymorphisms in the 3′ untranslated region (3′‐UTR) of vascular endothelial growth factor gene on gastric cancer and peptic ulcer diseases in Japan
AssociationN=850Tomomitsu Tahara et al.(2009)· Molecular Carcinogenesis

This case-control study of 450 Korean colorectal cancer (CRC) patients and 400 controls investigated the association of three VEGF 3'-UTR polymorphisms (rs3025040, rs10434, rs3025053) with CRC susceptibility and metabolic syndrome. VEGF 1451C>T (rs3025040) was significantly associated with rectal cancer risk (AOR=1.58, p=0.015), while VEGF 1725G>A (rs3025053) correlated with metabolic syndrome risk (AOR=1.61, p=0.026). Gene-environment interaction analyses revealed that VEGF 1451C>T combined with metabolic syndrome increased rectal cancer risk (AOR=3.15, p<0.001), and VEGF 1725G>A with metabolic syndrome elevated colon cancer risk (AOR=2.68, p=0.008).

Traits studied:Colon cancerColorectal cancerMetabolic syndromeRectal cancer

About VEGFA

This gene is a member of the PDGF/VEGF growth factor family. It encodes a heparin-binding protein, which exists as a disulfide-linked homodimer. This growth factor induces proliferation and migration of vascular endothelial cells, and is essential for both physiological and pathological angiogenesis. Disruption of this gene in mice resulted in abnormal embryonic blood vessel formation. This gene is upregulated in many known tumors and its expression is correlated with tumor stage and progression. Elevated levels of this protein are found in patients with POEMS syndrome, also known as Crow-Fukase syndrome. Allelic variants of this gene have been associated with microvascular complications of diabetes 1 (MVCD1) and atherosclerosis. Alternatively spliced transcript variants encoding different isoforms have been described. There is also evidence for alternative translation initiation from upstream non-AUG (CUG) codons resulting in additional isoforms. A recent study showed that a C-terminally extended isoform is produced by use of an alternative in-frame translation termination codon via a stop codon readthrough mechanism, and that this isoform is antiangiogenic. Expression of some isoforms derived from the AUG start codon is regulated by a small upstream open reading frame, which is located within an internal ribosome entry site. The levels of VEGF are increased during infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), thus promoting inflammation by facilitating recruitment of inflammatory cells, and by increasing the level of angiopoietin II (Ang II), one of two products of the SARS-CoV-2 binding target, angiotensin-converting enzyme 2 (ACE2). In turn, Ang II facilitates the elevation of VEGF, thus forming a vicious cycle in the release of inflammatory cytokines. [provided by RefSeq, Jun 2020]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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