rs3212227

This is a upstream gene variant variant in the IL12B gene.

ClinVar annotation

Benign☆☆☆
1 submitter

Mendelian susceptibility to mycobacterial diseases due to complete IL12B deficiency

View on ClinVar →

Research that mentions this SNP (16)

Genetic polymorphism patterns suggest a genetic driven inflammatory response as pathogenesis in appendicitis
AssociationN=343Jan Dimberg et al.(2020)· International Journal of Colorectal Disease

This case-control study analyzes 28 SNPs in 26 inflammatory response genes in 343 patients (100 with appendicitis, 243 controls) using TaqMan genotyping. Significant associations were found for IL-13 rs1800925 (OR=6.02, 95% CI 1.52-23.78), IL-17 rs2275913 (OR=2.38, 95% CI 1.24-4.57), and CCL22 rs223888 (OR=0.12, 95% CI 0.02-0.90), suggesting a genetic-driven inflammatory response as a pathogenic mechanism in appendicitis.

Traits studied:Advanced appendicitisAppendicitisPhlegmonous appendicitis
Genetic variation of FTO: rs1421085 T>C, rs8057044 G>A, rs9939609 T>A, and copy number (CNV) in Mexican Mayan school‐aged children with obesity/overweight and with normal weight
ReviewLizbeth González‐Herrera et al.(2019)· American Journal of Human Biology

A literature review of 70 studies examining single nucleotide polymorphisms (SNPs) associated with obesity in Mexican populations published 2011-2021. The authors identified SNPs with differential behavior in Mexican compared to Caucasian populations, including rs17782313 (MC4R), rs6548238 (TMEM18), rs6265 (BDNF), rs7498665 (SH2B1), and notably rs6232 (PCSK1) associated with early-onset obesity in Mexican youth. The review emphasizes ethnicity-dependent genetic effects on BMI heritability (40-70%) and highlights genes involved in cholesterol metabolism and adipokine signaling pathways.

Traits studied:AdiposityBlood pressureBody mass index (BMI)Cardiovascular risk factorsDyslipidemiaInsulin resistanceMetabolic syndromeObesityOverweightType 2 diabetes
Variation in genes involved in the immune response and prostate cancer risk in the placebo arm of the Prostate Cancer Prevention Trial
AssociationN=1,729Winchester DA et al.(2015)· The Prostate

This prospective case-control study examined genetic variation in immune response genes and prostate cancer risk in the Prostate Cancer Prevention Trial (PCPT) placebo arm. Among 881 cases and 848 controls, the minor allele of rs3212227 in IL12(p40) was associated with increased prostate cancer risk (OR=1.30, 95% CI 1.10-1.53, P-trend=0.0017), particularly for lower-grade disease. The minor alleles of IL10 tagSNPs rs3021094 (OR=1.31, 95% CI 1.03-1.66, P-trend=0.03) and rs1800890 (OR=0.87, 95% CI 0.75-0.99, P-trend=0.04) showed significant associations. The study investigated whether observed associations were explained by PSA-associated detection bias and found that associations persisted in men with low PSA levels.

Traits studied:Prostate cancerProstate cancer (higher-grade)Prostate cancer (lower-grade)
Meta-analysis of IL12B polymorphisms (rs3212227, rs6887695) with psoriasis and psoriatic arthritis
Meta-analysisN=13,050Kun-Ju Zhu et al.(2013)· Rheumatology International

Meta-analysis of 11 studies examining IL12B polymorphisms rs3212227 and rs6887695 in psoriasis and psoriatic arthritis. For rs3212227, pooled odds ratios for the minor allele were 0.688 (95% CI 0.650-0.729) for psoriasis and 0.707 (95% CI 0.628-0.797) for PsA; for rs6887695, pooled ORs were 0.704 (95% CI 0.670-0.739) for psoriasis and 0.677 (95% CI 0.599-0.767) for PsA, demonstrating significant protective associations with both variants.

Traits studied:PsoriasisPsoriasis vulgarisPsoriatic arthritis
Association of IL-12B gene rs6887695 polymorphism with hereditary susceptibility and clinical characterization of psoriasis vulgaris in the Chinese Han population
AssociationN=1,978Yumei Wu et al.(2013)· Archives of Dermatological Research

A case-control study of 575 Chinese Han psoriasis patients and 1,403 controls found that IL-12B rs6887695 G allele is significantly associated with psoriasis vulgaris susceptibility (OR=1.34, p=4.77e-005), particularly with plaque psoriasis, but not with age of onset, family history, or gender. The genotype GG was the most important genotype for psoriasis pathogenesis.

Traits studied:Guttate psoriasisPlaque psoriasisPsoriasis vulgaris
Nucleotide variation in IL‐10 and IL‐12 and their receptors and cervical and vulvar cancer risk: A hybrid case–parent triad and case–control study
AssociationN=4,300Shehnaz K. Hussain et al.(2013)· International Journal of Cancer

This hybrid case-parent triad and case-control study examined associations between 76 tagSNPs in IL10 and IL12 cytokine pathway genes (IL10, IL12A, IL12B, IL10RA, IL10RB, IL12RB1, IL12RB2) and cervical/vulvar cancer risk. Key findings include: IL10RA rs9610 (OR=1.76, 95% CI 1.15–2.68) and rs4252314 (OR=2.23, 95% CI 1.26–3.96) associated with increased cervical cancer risk; IL12RB2 rs4297265 (OR=0.46) and rs2229546 (OR=0.43) associated with reduced cervical SCC risk; IL12B rs3181224 associated with reduced vulvar SCC risk (OR=0.30, 95% CI 0.12–0.74); and IL12RB1 rs11575934 (OR=1.51, 95% CI 1.12–2.05) associated with increased cervical adenocarcinoma risk.

Traits studied:Cervical adenocarcinomaCervical squamous cell carcinomaVulvar squamous cell carcinoma
Associations between polymorphisms in IL-12A, IL-12B, IL-12Rβ1, IL-27 gene and serum levels of IL-12p40, IL-27p28 with esophageal cancer
AssociationN=858Yi-Peng Tao et al.(2012)· Journal of Cancer Research and Clinical Oncology

Case-control study investigating IL-12 family and IL-12Rb1 gene polymorphisms in esophageal cancer. rs3212227 CC/AC genotype significantly increased cancer risk (OR=1.515, P=0.006), and rs568408 AG/AA and IL-12Rb1 378 GG/GC also increased risk. These variants were associated with decreased serum IL-12p40 levels, suggesting impaired immune response contributes to esophageal cancer susceptibility.

Traits studied:Esophageal cancer
IL12 polymorphisms, HBV infection and risk of hepatocellular carcinoma in a high‐risk Chinese population
AssociationN=758Li Liu et al.(2011)· International Journal of Cancer

This case-control study of 518 hemodialysis patients and 240 controls investigates the association between IL12A (rs568408), IL12B (rs3212227), and IL18 (rs360719) gene polymorphisms and development of antibodies to hepatitis B virus surface antigen (anti-HBs). The rs360719 CC genotype was individually associated with increased anti-HBs development (p=0.009). Combined rs568408 AA and rs360719 TT genotypes showed a 10.9-fold lower chance of anti-HBs development (OR=0.092, p=0.005), while combined rs3212227 CC and rs360719 TC showed a 4.6-fold lower chance (OR=0.217, p=0.042). The study demonstrates that IL12 and IL18 polymorphisms individually and jointly contribute to anti-HBs development in hemodialysis patients.

Traits studied:Hepatitis B virus surface antigen antibodies (anti-HBs) developmentResponse to hepatitis B vaccination
Genetic evidence for involvement of the IL23 pathway in Thai psoriatics
AssociationN=320Rajan P. Nair et al.(2010)· Archives of Dermatological Research

This case-control genetic association study of 206 Thai psoriasis cases and 114 controls validates IL12B and IL23R as psoriasis susceptibility genes in Asian populations. The IL12B SNP rs3212227 showed significant association (OR=1.64, p=0.0058), and haplotype analysis of IL12B SNPs yielded highly significant association (p=0.00081, OR=1.73). IL23R SNP rs7530511 showed marginal significance (p=0.017), while rs11209026 was not polymorphic. The results support the IL23-mediated inflammatory pathway in psoriasis pathogenesis across racial groups despite differences in risk allele frequencies.

Traits studied:Psoriasis
Haplotypes of IL12B promoter polymorphisms condition susceptibility to severe malaria and functional changes in cytokine levels in Thai adults
AssociationN=355Chintana Phawong et al.(2010)· Immunogenetics

A case-control study of 355 Thai adults with P. falciparum malaria examined associations between IL12B polymorphisms (rs17860508 and rs3212227) and severe malaria susceptibility. The IL12B pro1.1 genotype was associated with increased severe malaria risk (OR=2.34) and higher IFNγ levels, while the IL12B pro-2/3'UTR-T haplotype provided protection (OR=0.51). Protection against severe malaria was associated with enhanced IL-12p40 and reduced IFNγ levels.

Traits studied:HyperparasitaemiaP. falciparum infectionSevere malariaUncomplicated malaria
Genetic epistasis of IL23/IL17 pathway genes in Crohnʼs disease
AssociationN=1,017Dermot P.B. McGovern et al.(2009)· Inflammatory Bowel Diseases

This case-control study of 763 Crohn's disease cases and 254 healthy controls investigated 10 genes in the IL23/IL17 pathway, identifying novel haplotype associations in IL17A (p=0.02), IL17RA (p=0.001), IL17RD (p=0.001), IL12RB1 (p=0.003), and IL12RB2 (p=0.001). Combined risk haplotypes from multiple pathway genes showed cumulative effect with OR=4.3 for 5 risk haplotypes (p=1.7×10⁻⁷), and significant epistatic interactions were observed between IL17A and IL23R variants (p=0.047) and between IL17RA and IL23R variants (p=0.036).

Traits studied:Crohn's disease
Association analysis of IL-12B and IL-23R polymorphisms in myocardial infarction
AssociationN=1,454Massimo Mangino et al.(2008)· Journal of Molecular Medicine

This case-control association study examined whether IL-12B and IL-23R polymorphisms associated with chronic inflammatory diseases also contribute to myocardial infarction (MI) risk in 738 British MI patients and 716 controls. Testing five variants (rs11209026, rs7517847, rs1343151, rs10889677 in IL-23R and rs3212227 in IL-12B) showed no significant associations with MI (all p > 0.05), suggesting these variants are unlikely to be major contributors to MI pathogenesis despite their strong protective effects in inflammatory bowel disease and psoriasis.

Traits studied:Coronary artery diseaseMyocardial infarction
Investigation of association of the IL12B and IL23R genes with psoriatic arthritis
AssociationN=4,681Charlotte Filer et al.(2008)· Arthritis & Rheumatism

This case-control study of 520 UK patients with psoriatic arthritis (PsA) and 2,260-4,681 controls examined IL23R and IL12B SNPs previously associated with psoriasis. Two IL23R SNPs (rs7530511 and rs11209026) showed borderline association when combined in a haplotype (adjusted p=0.013), while IL12B SNPs (rs3212227 and rs6887695) demonstrated stronger independent associations with PsA susceptibility under a dominant model (OR 1.43 for both). The results suggest these loci are primarily associated with psoriasis rather than PsA-specific arthritis.

Traits studied:PsoriasisPsoriatic arthritis
IL23R and IL12B polymorphisms in spanish IBD patients: No evidence of interaction
AssociationN=1,254Ana Márquez et al.(2008)· Inflammatory Bowel Diseases

This case-control study of 707 Spanish IBD patients (344 with Crohn's disease, 363 with ulcerative colitis) and 547 controls found significant associations between IL23R SNPs and IBD, with rs7517847 showing the strongest effect (OR = 0.79, p = 0.005). IL12B rs6887695 also showed association with IBD (OR = 1.24, p = 0.012), particularly in ulcerative colitis. No significant interaction between IL23R and IL12B polymorphisms was detected.

Traits studied:Crohn's diseaseInflammatory bowel disease (IBD)Ulcerative colitis
Common variants in genes that mediate immunity and risk of multiple myeloma
AssociationN=672Elizabeth E. Brown et al.(2007)· International Journal of Cancer

A case-control study of 127 multiple myeloma (MM) cases and 545 controls examined 82 common variants in 45 genes mediating immunity. IL4R rs2107356 (−28120T homozygotes, OR=1.91, 95% CI 1.08-3.38) and FCGR2A rs1801274 (−120G homozygotes, OR=1.95, 95% CI 1.06-3.60) were significantly associated with increased MM risk. A haplotype in the LTA*TNF complex (LTA −82C/−90G*TNF −1036C/−487G/−417G, OR=1.63, 95% CI 1.02-2.61) was also associated with increased MM risk compared to controls.

Traits studied:Multiple myeloma
Sequence variants in the genes for the interleukin-23 receptor (IL23R) and its ligand (IL12B) confer protection against psoriasis
AssociationN=1,653Capon F. et al.(2007)· Human Genetics

A candidate gene study of 837 psoriasis cases and 816 controls identified protective variants in IL-23 signaling genes. IL23R p.Arg381Gln (rs11209026) showed reduced frequency in cases vs controls (P=0.00014, OR=0.49). IL12B variants rs10045431 (P=0.0001, OR=1.41) and rs3212227 (P=0.036, OR=0.76) showed independent associations, establishing IL23 receptor signaling as a major pathway in psoriasis susceptibility.

Traits studied:Psoriasis

About IL12B

This gene encodes a subunit of interleukin 12, a cytokine that acts on T and natural killer cells, and has a broad array of biological activities. Interleukin 12 is a disulfide-linked heterodimer composed of the 40 kD cytokine receptor like subunit encoded by this gene, and a 35 kD subunit encoded by IL12A. This cytokine is expressed by activated macrophages that serve as an essential inducer of Th1 cells development. This cytokine has been found to be important for sustaining a sufficient number of memory/effector Th1 cells to mediate long-term protection to an intracellular pathogen. Overexpression of this gene was observed in the central nervous system of patients with multiple sclerosis (MS), suggesting a role of this cytokine in the pathogenesis of the disease. The promoter polymorphism of this gene has been reported to be associated with the severity of atopic and non-atopic asthma in children. [provided by RefSeq, Jul 2008]

View all IL12B variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

Community Wiki

No community notes yet for this variant. Sign in to start one.

Comments

Sign in to join the discussion.

Loading comments…