rs333
mixedMag 9.0This is a frameshift variant variant in the CCR5 gene.
Key Literature Trait Associations
HIV-1 Infection Resistance
The CCR5-Δ32 deletion produces a truncated, non-functional CCR5 coreceptor that cannot support HIV-1 cell entry. Homozygous carriers (D/D) are nearly completely resistant to R5-tropic HIV-1 infection; in a study of 1,955 individuals across six AIDS cohorts, all 17 Δ32 homozygotes were found exclusively among the 612 exposed but HIV-seronegative subjects, with none among 1,343 HIV-infected individuals. The allele frequency is approximately 10% in European populations and is absent in African and East Asian populations.
West Nile Virus Susceptibility
CCR5 is required for leukocyte trafficking to the brain during West Nile virus (WNV) infection. In two independent cohorts, CCR5-Δ32 homozygotes were markedly overrepresented among symptomatic WNV patients: OR = 4.4 (95% CI 1.6–11.8, P = 0.0013) in Arizona and OR = 9.1 (95% CI 3.4–24.8, P < 0.0001) in Colorado, compared with 1.0% homozygote frequency in healthy controls.
HIV-1 Disease Progression
Heterozygous carriers of CCR5-Δ32 (D/I) who become HIV-infected show significantly delayed progression to AIDS and death. An international meta-analysis of 19 cohorts found that heterozygosity conferred a 26% reduction in risk of progression to AIDS (RH = 0.74, P = 0.01) and a 36% reduction in risk of death (RH = 0.64, P < 0.05) among seroconverters. Heterozygotes also had lower HIV-1 viral load set points, with a mean reduction of 0.18 log₁₀ copies/mL.
▶Research that mentions this SNP (4)
▶CCR5Δ32 (rs333) polymorphism is associated with the susceptibility to systemic lupus erythematosus in female Brazilian patientsAssociationN=301Thiago Hissnauer Leal Baltus et al.(2016)· Rheumatology International
CCR5 ∆32 (rs333) polymorphism is associated with increased susceptibility to systemic lupus erythematosus in female Brazilian patients. Heterozygous (CCR5/CCR5∆32) and homozygous (CCR5∆32/CCR5∆32) carriers showed significantly higher frequencies compared to healthy controls (11.8% vs 3.8% in controls, OR 3.604, 95% CI 1.321-9.836, p=0.0081). The association was stronger in Caucasian patients (OR 3.933, 95% CI 1.109-13.95, p=0.0286).
▶Genome‐wide association study of neurocognitive impairment and dementia in HIV‐infected adultsAssociationN=1,287Andrew J. Levine et al.(2012)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
First genome-wide association study (GWAS) of HIV-associated neurocognitive disorders (HAND) in 1287 HIV-infected adults from the Multicenter AIDS Cohort Study. The study examined neurocognitive decline in processing speed and executive functioning over time, as well as prevalence of HIV-associated dementia and neurocognitive impairment across ~2.5 million SNPs. No genome-wide significant associations were identified with any neurocognitive phenotype examined. Previously reported candidate gene associations with HAND (including rs1130371 in MIP1α, rs1800629 in TNFα, rs1801157 in SDF-1, and rs2839619 in PREP1) were not validated in this study.
▶Limited use of interleukin 28B in the setting of response-guided treatment with detailed on-treatment virological monitoringReviewAlessandra Mangia et al.(2011)· Hepatology
This is a special issue of the Italian medical journal BeAdfiles (September 2012) dedicated to genetic conditioning in HIV and hepatitis virus infections. It reviews the major genetic polymorphisms that influence disease progression, treatment response, and drug toxicity in HIV and chronic hepatitis B and C infections, with particular emphasis on IL28B polymorphisms (rs809917 and others) predicting HCV treatment response to interferon-alpha and ribavirin therapy, and ITPA gene variants protecting against ribavirin-induced anemia. The issue also covers pharmacogenetic markers (CYP2B6, ABCB1, HLA-B*5701) and their clinical applications in antiretroviral therapy.
▶Role of Toll-like Receptor 4 in Acute Myocardial Infarction and LongevityReviewBalistreri CR et al.(2004)· JAMA
A review article examining the genetic basis of COVID-19 susceptibility and protection from a longevity model perspective. The authors propose that genetic variants in the renin-angiotensin system (ACE, ACE2, AT1R, ANGIOTENSINOGEN), innate immunity genes (TLR4, CCR5, Connexin37), inflammatory cytokines (IL-6, IL-10, TNF-α, IFN-γ), and coagulation factors (PAI-1, Factor V) may influence COVID-19 outcomes, with long-lived individuals (nonagenarians/centenarians) serving as a model for identifying protective genetic profiles.
Gene information from NCBI Gene. Variant classifications from ClinVar.
Community Wiki
No community notes yet for this variant. Sign in to start one.
Comments
Sign in to join the discussion.
Loading comments…