rs334354
This is a upstream gene variant variant in the TGFBR1 gene.
▶GWAS Catalog Trait Associations (1)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (1)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
age at onset, Myopia
▶ClinVar annotation
Familial thoracic aortic aneurysm and aortic dissection (TAAD); Loeys-Dietz syndrome 1 (LDS1); Multiple self-healing squamous epithelioma (MSSE); not specified
View on ClinVar →▶Research that mentions this SNP (2)
▶Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromesMethodsN=87Machteld Baetens et al.(2011)· Human Mutation
This study developed and validated a multiplex PCR-based next-generation sequencing (NGS) workflow for identifying mutations in FBN1, TGFBR1, and TGFBR2 genes associated with Marfan and Loeys-Dietz syndromes. In 87 Marfan syndrome patients, the NGS workflow identified 72 unique FBN1 mutations (57 novel), with an overall mutation identification rate of 92% (80/87 patients). Of the 72 FBN1 mutations, 34 were missense (24 involving cysteines), 15 frameshift, 9 nonsense, 9 splice-site, 4 large rearrangements, and 1 in-frame deletion, with complementary MLPA analysis detecting 4 large deletions/insertions.
▶Genetic Polymorphisms in the Transforming Growth Factor-β Signaling Pathways and Breast Cancer Risk and SurvivalReviewWei Zheng et al.(2009)· Methods in Molecular Biology
A literature review summarizing epidemiologic evidence for associations between genetic polymorphisms in TGF-β signaling pathway genes and breast cancer risk and survival. The TGFB1 T+29C polymorphism (rs1982073) is the most studied variant, with meta-analysis showing a summary OR of 0.92 (95% CI=0.81-1.05) for CC genotype versus TT; results across studies were inconsistent. The TGFBR1 9A/6A polymorphism showed evidence of elevated risk with the *6A allele in some studies. For survival, TGFB1 variant C allele carriers showed reduced disease-free survival (HR=1.4, 95% CI=1.0-1.9) in one major study.
About TGFBR1
The protein encoded by this gene forms a heteromeric complex with type II TGF-beta receptors when bound to TGF-beta, transducing the TGF-beta signal from the cell surface to the cytoplasm. The encoded protein is a serine/threonine protein kinase. Mutations in this gene have been associated with Loeys-Dietz aortic aneurysm syndrome (LDAS). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2008]
View all TGFBR1 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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