rs356165

This is a downstream gene variant variant in the SNCA gene.

ClinVar annotation

Benign★★★
3 submitters1 publication

Parkinson Disease, Dominant

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Research that mentions this SNP (3)

Meta‐analysis of Parkinson's Disease: Identification of a novel locus, RIT2
Meta-analysisN=14,326Nathan Pankratz et al.(2012)· Annals of Neurology

Meta-analysis of five Parkinson disease GWAS studies (4,238 cases, 4,239 controls) identifying a novel susceptibility locus at RIT2 (rs12456492, OR=1.19, p=2×10⁻¹⁰). Multiple independent associations detected at SNCA (rs356220, rs356198), GBA (E326K and N370S variants), and other loci including GAK/DGKQ, MAPT, and HLA region. Results replicated in 3,738 cases and 2,111 controls.

Traits studied:Parkinson disease
SNCA Variant Associated With Parkinson Disease and Plasma α-Synuclein Level
AssociationN=4,068Ignacio F. Mata et al.(2010)· Archives of Neurology

This case-control association study of 1,956 Parkinson's disease (PD) patients and 2,112 controls identified rs356219 (OR=1.41, 95% CI 1.28-1.55, p=1.6×10⁻¹²) as a major genetic susceptibility variant for PD located ~9 kb downstream of SNCA. The risk allele was associated with increased plasma α-synuclein levels in PD cases (p=0.005), suggesting the functional variant tagged by rs356219 may upregulate SNCA expression in a dose-dependent manner, independent of the previously known REP1 promoter repeat polymorphism.

Traits studied:Parkinson's disease
Calbindin 1, fibroblast growth factor 20, and α-synuclein in sporadic Parkinson’s disease
AssociationN=3,341Ikuko Mizuta et al.(2008)· Human Genetics

Case-control association study of 302 SNPs in 137 candidate genes for sporadic Parkinson's disease in Japanese populations. The strongest association was rs1805874 in CALB1 (P = 7.1 × 10−5, OR = 1.34, recessive model) in combined analysis of 1,403 cases and 1,938 controls across two sample sets. SNCA rs7684318 showed prominent association (P = 5.1 × 10−14), and FGF20 was associated synergistically with SNCA.

Traits studied:Parkinson's diseasesporadic Parkinson's disease

About SNCA

Alpha-synuclein is a member of the synuclein family, which also includes beta- and gamma-synuclein. Synucleins are abundantly expressed in the brain and alpha- and beta-synuclein inhibit phospholipase D2 selectively. SNCA may serve to integrate presynaptic signaling and membrane trafficking. Defects in SNCA have been implicated in the pathogenesis of Parkinson disease. SNCA peptides are a major component of amyloid plaques in the brains of patients with Alzheimer's disease. Alternatively spliced transcripts encoding different isoforms have been identified for this gene. [provided by RefSeq, Feb 2016]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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