rs362307

This is a upstream gene variant variant in the HTT gene.

GWAS Catalog Trait Associations (11)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

health trait

Allele C
OR 0.02
p 4.0e-14
N 405,979
Large GWAS
European

type 2 diabetes mellitus

Allele T
OR
p 2.0e-12
N 2,535,601
Large GWAS
multi-ancestry
Allele T
OR 0.05
p 4.0e-8
N 1,114,458
Meta-analysisLarge GWAS
European
Allele T
OR 1.08
p 1.0e-9
N 898,130
Large GWAS
European

worry measurement

Nagel M et al. Item-level analyses reveal genetic heterogeneity in neuroticism. Nature Communications 9(1):905 (2018)
Allele T
OR 6.13
p 9.0e-10
N 367,725
Large GWAS
European
Allele T
OR 0.01
p 1.0e-9
N 270,059
Large GWAS
European

forced expiratory volume

Allele C
OR 0.02
p 1.0e-9
N 373,397
Large GWAS
European

gait quality

Allele C
OR 0.01
p 1.0e-9
N 450,967
Large GWAS
European

household income

Allele T
OR 0.02
p 2.0e-9
N 505,541
Large GWAS
European, NR

visceral adipose tissue quantity

Allele T
OR 0.03
p 2.0e-9
N 325,153
Large GWAS
European

About HTT

Huntingtin is a disease gene linked to Huntington's disease, a neurodegenerative disorder characterized by loss of striatal neurons. This is thought to be caused by an expanded, unstable trinucleotide repeat in the huntingtin gene, which translates as a polyglutamine repeat in the protein product. A fairly broad range of trinucleotide repeats (9-35) has been identified in normal controls, and repeat numbers in excess of 40 have been described as pathological. The huntingtin locus is large, spanning 180 kb and consisting of 67 exons. The huntingtin gene is widely expressed and is required for normal development. It is expressed as 2 alternatively polyadenylated forms displaying different relative abundance in various fetal and adult tissues. The larger transcript is approximately 13.7 kb and is expressed predominantly in adult and fetal brain whereas the smaller transcript of approximately 10.3 kb is more widely expressed. The genetic defect leading to Huntington's disease may not necessarily eliminate transcription, but may confer a new property on the mRNA or alter the function of the protein. One candidate is the huntingtin-associated protein-1, highly expressed in brain, which has increased affinity for huntingtin protein with expanded polyglutamine repeats. This gene contains an upstream open reading frame in the 5' UTR that inhibits expression of the huntingtin gene product through translational repression. [provided by RefSeq, Jul 2016]

View all HTT variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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