rs363039

This is a intron variant variant in the SNAP25 gene.

Research that mentions this SNP (5)

Variants in SNAP25 are targets of natural selection and influence verbal performances in women
AssociationN=438Rachele Cagliani et al.(2012)· Cellular and Molecular Life Sciences

This study examined SNAP25 genetic variants and their association with cognitive performance through both population genetic analysis and association studies. The authors identified that the region carrying rs363039 shows evidence of balancing selection across human populations. In Italian cohorts (368 children aged 3-11 years and 70 neuromuscular patients), heterozygosity for rs363039 was associated with higher verbal performance in females (p=5.8×10⁻⁵ in combined child cohort), while males showed no significant association.

Traits studied:Cognitive abilityIntelligence quotientVerbal performanceWorking memory
Evidence that putative ADHD low risk alleles atSNAP25may increase the risk of schizophrenia
AssociationN=1,378Carroll LS et al.(2009)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Directed mutation screening and tag SNP association analysis of SNAP25 in 662 UK schizophrenic cases and 716 controls identified significant associations at rs3746544 (P=0.004, OR=1.26) and rs8636 (P=0.003, OR=1.27), both of which survive permutation correction. Additional tag SNP analysis revealed rs3787283 (P=0.006, OR=1.25) and several nominally associated SNPs. Notably, the schizophrenia risk alleles are opposite to ADHD protective alleles at the same loci, suggesting differential allelic effects across psychiatric disorders.

Traits studied:ADHDAntipsychotic responseSchizophrenia
The monoamine oxidase B gene exhibits significant association to ADHD
ReviewJun Li et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This review of molecular genetic studies of ADHD in Han Chinese populations summarizes candidate gene studies across dopaminergic, noradrenergic, serotonergic, and enzymatic systems, along with the first GWAS in Chinese ADHD cases (n=1040) and controls (n=963). While no single gene has been definitively identified, significant associations include DRD4 7-repeat allele (OR=1.70, 95% CI 1.20-2.40, p=0.003 in males), DBH rs2519152, and various polymorphisms in COMT, NET1, and serotonin genes, though results remain inconsistent across studies.

Traits studied:ADHD-Combined subtypeADHD-Hyperactive/Impulsive subtypeADHD-Inattentive subtypeAttentionAttention deficit hyperactivity disorderDisruptive behavior disorder comorbidityExecutive functionIQLearning disorder comorbidityOppositional defiant disorder comorbidityResponse inhibitionTic disorder comorbidityWorking memory
SNPs in dopamine D2 receptor gene (DRD2) and norepinephrine transporter gene (NET) are associated with continuous performance task (CPT) phenotypes in ADHD children and their families
AssociationN=364Kollins SH et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Haplotype-tagging SNP analysis in 364 individuals from 152 ADHD families identified significant associations between commission errors and SNPs in the DRD2 gene (rs2075654, rs1079596) and between reaction time variability and a SNP in the NET gene (rs3785155). These findings suggest that commission errors and reaction time variability are valid ADHD endophenotypes linked to dopaminergic and noradrenergic pathways.

Traits studied:ADHDCommission errors (Continuous Performance Task)Detectability (CPT)Hit reaction timeHit reaction time standard errorReaction time variability (Continuous Performance Task)
Monoamine oxidase A gene polymorphism predicts adolescent outcome of attention‐deficit/hyperactivity disorder
ReviewJun Li et al.(2007)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This review examines molecular genetic studies of attention-deficit hyperactivity disorder (ADHD) in Han Chinese samples, including candidate gene studies, endophenotype research, genome-wide association studies, and pharmacogenomic investigations. Eight GWAS conducted for ADHD have been inconclusive with no genome-wide significant associations identified, though candidate gene studies have identified associations with dopaminergic (DAT1, DRD4, DRD2, DRD3), noradrenergic (NET1, ADRA2A, ADRA2C), serotonergic (SLC6A4, HTR genes), and metabolic pathway genes (COMT, MAOA, MAOB, DBH, TPH). A meta-analysis of DRD4 longer repeats showed OR=1.70-1.74 in males with ADHD-C subtype.

Traits studied:ADHD combined subtype (ADHD-C)ADHD primarily hyperactive/impulsive subtype (ADHD-HI)ADHD primarily inattentive subtype (ADHD-I)ADHD with comorbid disruptive behavior disorder (DBD)ADHD with comorbid learning disorderADHD with comorbid oppositional defiant disorder (ODD)ADHD with comorbid tic disorderAttention-deficit hyperactivity disorder (ADHD)Executive functionImpulsivityIntelligence quotient (IQ)Response inhibition

About SNAP25

Synaptic vesicle membrane docking and fusion is mediated by SNAREs (soluble N-ethylmaleimide-sensitive factor attachment protein receptors) located on the vesicle membrane (v-SNAREs) and the target membrane (t-SNAREs). The assembled v-SNARE/t-SNARE complex consists of a bundle of four helices, one of which is supplied by v-SNARE and the other three by t-SNARE. For t-SNAREs on the plasma membrane, the protein syntaxin supplies one helix and the protein encoded by this gene contributes the other two. Therefore, this gene product is a presynaptic plasma membrane protein involved in the regulation of neurotransmitter release. Two alternative transcript variants encoding different protein isoforms have been described for this gene. [provided by RefSeq, Jul 2008]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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