rs3748067

This is a regulatory region variant variant in the IL17A gene.

ClinVar annotation

Benign☆☆☆
1 submitter
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Research that mentions this SNP (5)

Functional single nucleotide polymorphism in IL−17A 3′ untranslated region is targeted by miR‐4480 in vitro and may be associated with age‐related macular degeneration
AssociationN=899Nicholas A. Popp et al.(2016)· Environmental and Molecular Mutagenesis

This association and functional study identified rs7747909 in the IL-17A 3' UTR as associated with age-related macular degeneration (AMD) in a NEI cohort (p=0.0022, OR=1.73) but the association failed to replicate in the AREDS cohort. Functional experiments demonstrated that rs7747909 affects microRNA-4480 binding to IL-17A mRNA in an allele-specific manner, with the G allele showing stronger miRNA binding and reduced luciferase expression (~40% suppression, p<0.001) compared to the A allele.

Traits studied:AMDAge-related macular degeneration
Association of Variants in IL2RA With Progression of Joint Destruction in Rheumatoid Arthritis
ReviewKnevel R. et al.(2013)· Arthritis &amp; Rheumatism

This systematic literature review examines interleukin and interleukin receptor gene polymorphisms associated with rheumatoid arthritis (RA) pathogenesis, diagnostics, and treatment. The paper summarizes polymorphisms in multiple IL genes (IL-1B rs16944, rs1143634; IL-6 rs1800795, rs1800796; IL-10 rs1800896; IL-23R rs11209026; IL-17A rs2275913 and others) across diverse populations, their associations with RA susceptibility and disease severity, and discusses current and future immunologic therapeutic targets including TNF inhibitors and IL-6 receptor antagonists.

Traits studied:ACPA (anti-citrullinated protein antibody) positivityDisease severityErosive joint damageRadiographic progressionRheumatoid arthritis
Interleukin‐17 gene polymorphisms are associated with bladder cancer in a chinese han population
AssociationN=1,060Bin Zhou et al.(2013)· Molecular Carcinogenesis

A retrospective case-control study investigating immunogenetic factors in pulmonary tuberculosis (TBP) conducted in Cantabria, Spain with 318 TBP patients, 218 latently infected (ITL) individuals, and 524 healthy controls. Multiple HLA alleles and immune-related genetic polymorphisms were analyzed for association with TB susceptibility. Key findings include HLA-B07, B08, B14, B44 as protective factors against active disease; the IL-17 -152G allele (rs2275913) and GG genotype significantly more frequent in TBP patients (OR 1.40-1.59, p<0.02); TLR1 1805G polymorphism (rs5743618) associated with TB susceptibility; and KIR gene frequency variations between study groups.

Traits studied:Tuberculosis, Latent InfectionTuberculosis, Pulmonary
Genetic polymorphisms of interleukin 17A and interleukin 17F and their association with inflammatory bowel disease in a Chinese Han population
AssociationN=620Xiaofei Zhang et al.(2013)· Inflammation Research

Case-control study of 270 UC and 82 CD patients versus 268 controls in a Chinese Han population found that IL17F rs763780 mutant allele C was significantly associated with increased Crohn's disease risk (OR 1.18, 95% CI 1.41-3.04, P=0.033) and ileocolic phenotype. IL17A rs2275913 G-197A variant showed weak association with UC disease severity, and a rare IL17A haplotype (GGTT; rs2275913/rs8193037/rs8193038/rs3804513) was a risk factor for UC (OR 4.58, P=0.034).

Traits studied:Crohn's diseaseInflammatory bowel diseaseUlcerative colitis
Confirmation of STAT4, IL2/IL21, and CTLA4 polymorphisms in rheumatoid arthritis
ReviewNina A. Daha et al.(2009)· Arthritis &amp; Rheumatism

This systematic literature review examines interleukin (IL) and interleukin receptor gene polymorphisms associated with rheumatoid arthritis (RA), covering studies from the past 10 years. The review discusses the pathogenesis of RA as a multifactorial autoimmune disease where genetic factors account for approximately 60% of disease risk. Multiple polymorphisms across IL-1, IL-2, IL-4, IL-6, IL-8, IL-10, IL-15, IL-17, IL-18, and IL-23R genes have been investigated in various populations, with inconsistent results across populations. The paper also reviews current and future therapeutic targets including anti-TNF, anti-IL-1, anti-IL-6, and anti-IL-17 treatments.

Traits studied:Rheumatoid arthritis

About IL17A

This gene is a member of the IL-17 receptor family which includes five members (IL-17RA-E) and the encoded protein is a proinflammatory cytokine produced by activated T cells. IL-17A-mediated downstream pathways induce the production of inflammatory molecules, chemokines, antimicrobial peptides, and remodeling proteins. The encoded protein elicits crucial impacts on host defense, cell trafficking, immune modulation, and tissue repair, with a key role in the induction of innate immune defenses. This cytokine stimulates non-hematopoietic cells and promotes chemokine production thereby attracting myeloid cells to inflammatory sites. This cytokine also regulates the activities of NF-kappaB and mitogen-activated protein kinases and can stimulate the expression of IL6 and cyclooxygenase-2 (PTGS2/COX-2), as well as enhance the production of nitric oxide (NO). IL-17A plays a pivotal role in various infectious diseases, inflammatory and autoimmune disorders, and cancer. High levels of this cytokine are associated with several chronic inflammatory diseases including rheumatoid arthritis, psoriasis and multiple sclerosis. The lung damage induced by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is to a large extent, a result of the inflammatory response promoted by cytokines such as IL17A. [provided by RefSeq, Sep 2020]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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