rs3780412

This is a intron variant variant in the SLC1A1 gene.

ClinVar annotation

Benign★★★
2 submitters1 publication
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Research that mentions this SNP (4)

Association of the Glutamate Transporter Gene SLC1A1 With Atypical Antipsychotics–Induced Obsessive-compulsive Symptoms
AssociationN=1,123Jun Soo Kwon et al.(2009)· Archives of General Psychiatry

Case-control association study examining six SNPs in the SLC1A1 (glutamate transporter) gene in 615 Korean OCD patients and 508 healthy controls. While no significant associations were found between individual SNPs or haplotypes and OCD status (all p > 0.05), the C-T-G haplotype at rs301430-rs301434-rs3087879 was significantly associated with higher personal distress scores (p = 0.0419). Results suggest SLC1A1 variants may not contribute to OCD development but may influence trait empathy dimensions.

Traits studied:Empathic concernFantasy seekingObsessive-compulsive disorderPersonal distressPerspective takingTrait empathy
A Haplotype Containing Quantitative Trait Loci for SLC1A1 Gene Expression and Its Association With Obsessive-Compulsive Disorder
AssociationN=987Jens R. Wendland et al.(2009)· Archives of General Psychiatry

Case-control study of 325 OCD probands and 662 controls identifying a three-SNP haplotype (rs3087879, rs301430, rs7858819) significantly associated with obsessive-compulsive disorder (odds ratio 1.89, p=0.001). rs301430 was confirmed as a functional expression quantitative trait locus, and rs3933331 showed association with OCD-related hoarding symptoms. The findings implicate SLC1A1, encoding the neuronal glutamate transporter, as a susceptibility gene for OCD.

Traits studied:Compulsive hoardingObsessive-compulsive disorder
A family‐based association study of the glutamate transporter gene SLC1A1 in obsessive–compulsive disorder in 378 families
AssociationN=903Shugart YY et al.(2009)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A case-control study of 438 OCD patients and 465 controls from the Chinese Han population examined four SLC1A1 SNPs (rs10491734, rs3780412, rs301434, rs3087879). Rs301434 genotypes showed significant associations with total OCD (χ²=9.948, P=0.007), early-onset OCD (P=0.011), late-onset OCD (P=0.012), and male OCD (P=0.013). Rs3780412 was associated with late-onset OCD (P=0.027 for genotype, P=0.018 for allele). Haplotype analysis found G-A-A-G and G-G-A-G haplotypes associated with total OCD (OR=1.412), with gender and age-specific associations.

Traits studied:Early-onset OCDLate-onset OCDObsessive-compulsive disorder
Family‐based association testing of OCD‐associated SNPs of SLC1A1 in an autism sample
AssociationN=86Camille W. Brune et al.(2008)· Autism Research

This family-based association study tested three SLC1A1 SNPs (rs301430, rs301979, rs301434) previously associated with OCD for association with autism in 86 trios. The G allele of rs301979 was undertransmitted to individuals with autism under the FBAT recessive model (Z = -2.47, P = 0.01), equivalent to overtransmission of the C allele under a dominant model. A T/G haplotype (rs301430-rs301979) was also nominally undertransmitted under the recessive model. These findings persisted in males but did not survive multiple comparisons correction.

Traits studied:AutismAutism spectrum disorderObsessive-compulsive disorder (OCD)

About SLC1A1

This gene encodes a member of the high-affinity glutamate transporters that play an essential role in transporting glutamate across plasma membranes. In brain, these transporters are crucial in terminating the postsynaptic action of the neurotransmitter glutamate, and in maintaining extracellular glutamate concentrations below neurotoxic levels. This transporter also transports aspartate, and mutations in this gene are thought to cause dicarboxylicamino aciduria, also known as glutamate-aspartate transport defect. [provided by RefSeq, Mar 2010]

View all SLC1A1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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