rs3785143

This is a regulatory region variant variant in the SLC6A2 gene.

Research that mentions this SNP (10)

Testing for the mediating role of endophenotypes using molecular genetic data in a twin study of ADHD traits
AssociationN=1,312Rebecca Pinto et al.(2016)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A twin study of 1,312 children investigating genetic mediation of endophenotypes in ADHD. Using candidate gene SNPs from dopaminergic, noradrenergic, and serotonergic pathways, the study found the strongest association between rs7984966 in HTR2A and reaction time variability (P=0.007), and rs3785157 in SLC6A2 with commission errors. Mediation analyses revealed that commission errors mediated 38% of the SLC6A2-inattention association, and reaction time variability mediated 44% of the HTR2A-inattention association, suggesting these cognitive measures are intermediate phenotypes on the genetic pathway to ADHD.

Traits studied:ADHDCommission errorsHyperactivity-impulsivityInattentionReaction time variabilityReading difficulties
A high density linkage disequilibrium mapping in 14 noradrenergic genes: evidence of association between SLC6A2, ADRA1B and ADHD
AssociationN=810Ziarih Hawi et al.(2013)· Psychopharmacology

High-density SNP mapping of 14 noradrenergic genes in 270 ADHD families (810 individuals from Ireland and Australia) revealed suggestive single-SNP associations but significant haplotype associations in SLC6A2 (5-SNP haplotype: rs36009, rs1800887, rs8049681, rs2242447, rs9930182; χ²=9.39, p=0.019, OR=1.51) and ADRA1B (6-SNP haplotype: rs2030373, rs6884105, rs756275, rs6892282, rs6888306, rs13162302; χ²=7.79, p=0.042, OR=2.74). Notable single-SNP findings included rs8047672 in SLC6A2 (χ²=7.21, p=0.007, OR=2.04) and rs6888306 in ADRA1B (χ²=5.95, p=0.014, OR=1.46), supporting a role of the noradrenergic pathway in ADHD genetic risk.

Traits studied:ADHDAttention Deficit Hyperactivity Disorder
Further evidence of association between amphetamine response and SLC6A2 gene variants
AssociationN=159Andrea M. Dlugos et al.(2009)· Psychopharmacology

This study examined 11 SLC6A2 gene SNPs in 159 healthy Caucasian volunteers using a double-blind crossover design with placebo and D-amphetamine (10 and 20 mg). SNPs rs36017 and rs1861647 were significantly associated with higher ratings of elation and vigor after 20 mg D-amphetamine, with p-values of 0.033 and 0.002 respectively. Haplotype blocks also showed significant associations with vigor responses.

Traits studied:Amphetamine response (elation)Amphetamine response (vigor)Drug response phenotype
Conduct disorder and ADHD: Evaluation of conduct problems as a categorical and quantitative trait in the international multicentre ADHD genetics study
AssociationN=590Richard J.L. Anney et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Analysis of 554 SNPs across 47 candidate genes in 590 families from the IMAGE ADHD genetics study found no overall parent-of-origin effect (χ² = 1.82, P = 0.117) for ADHD transmission. Five SNP markers in DDC, TPH2, and SLC6A2 showed nominal associations (P < 0.01) with ADHD combined subtype when restricted to maternal or paternal transmission only, but these findings likely represent false positives given multiple comparisons.

Traits studied:ADHD combined subtypeAttention-deficit/hyperactivity disorder (ADHD)
Replication of a rare protective allele in the noradrenaline transporter gene and ADHD
AssociationN=1,843Xu X. et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This replication study tested association of two SNPs in the noradrenaline transporter gene (SLC6A2) with ADHD across four independent datasets (IMAGE ST2, Dublin, and MGH samples). rs11568324 showed consistent evidence for a rare protective T allele (OR=0.33-0.34 across datasets, combined P=8×10⁻⁵), while rs3785143 showed weaker and inconsistent association (combined P=0.008, OR=1.3). The rare T allele of rs11568324 (MAF~1%) appears to confer protection against ADHD, though clinical relevance is limited due to its rarity.

Traits studied:Attention deficit hyperactivity disorder (ADHD)
SNPs in dopamine D2 receptor gene (DRD2) and norepinephrine transporter gene (NET) are associated with continuous performance task (CPT) phenotypes in ADHD children and their families
AssociationN=364Kollins SH et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Haplotype-tagging SNP analysis in 364 individuals from 152 ADHD families identified significant associations between commission errors and SNPs in the DRD2 gene (rs2075654, rs1079596) and between reaction time variability and a SNP in the NET gene (rs3785155). These findings suggest that commission errors and reaction time variability are valid ADHD endophenotypes linked to dopaminergic and noradrenergic pathways.

Traits studied:ADHDCommission errors (Continuous Performance Task)Detectability (CPT)Hit reaction timeHit reaction time standard errorReaction time variability (Continuous Performance Task)
Sexually dimorphic effects of four genes (COMT, SLC6A2, MAOA, SLC6A4) in genetic associations of ADHD: A preliminary study
AssociationN=474Joseph Biederman et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This family-based association study investigated four ADHD candidate genes (COMT, SLC6A2, MAOA, SLC6A4) for sexually dimorphic genetic effects in 474 ADHD-affected offspring. The Met allele of COMT Val158Met showed stronger association in males (OR=1.42, p=0.003) but not females (p=0.936), and when combined with prior data showed significant gender effects (p=0.007). SLC6A2 and MAOA also showed sex-stratified associations, supporting the hypothesis that ADHD risk genes have sexually dimorphic effects.

Traits studied:Attention-Deficit/Hyperactivity Disorder (ADHD)
The monoamine oxidase B gene exhibits significant association to ADHD
ReviewJun Li et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This review of molecular genetic studies of ADHD in Han Chinese populations summarizes candidate gene studies across dopaminergic, noradrenergic, serotonergic, and enzymatic systems, along with the first GWAS in Chinese ADHD cases (n=1040) and controls (n=963). While no single gene has been definitively identified, significant associations include DRD4 7-repeat allele (OR=1.70, 95% CI 1.20-2.40, p=0.003 in males), DBH rs2519152, and various polymorphisms in COMT, NET1, and serotonin genes, though results remain inconsistent across studies.

Traits studied:ADHD-Combined subtypeADHD-Hyperactive/Impulsive subtypeADHD-Inattentive subtypeAttentionAttention deficit hyperactivity disorderDisruptive behavior disorder comorbidityExecutive functionIQLearning disorder comorbidityOppositional defiant disorder comorbidityResponse inhibitionTic disorder comorbidityWorking memory
Genome‐wide association study of response to methylphenidate in 187 children with attention‐deficit/hyperactivity disorder
AssociationN=187Eric Mick et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This genome-wide association study examined methylphenidate response in 187 children with ADHD using 319,722 SNPs. The most significant association was at P=3×10⁻⁶ (rs9627183 and rs11134178), falling short of genome-wide significance. Two SNPs in the norepinephrine transporter gene (NET/SLC6A2) showed suggestive evidence (rs17841329 and rs192303, P<0.01), while the metabotropic glutamate receptor 7 gene (GRM7, rs3792452) showed the most intriguing association (P=2.6×10⁻⁵), implicating noradrenergic and glutaminergic pathways in methylphenidate response.

Traits studied:Attention-Deficit/Hyperactivity Disorder (ADHD)Methylphenidate response
Monoamine oxidase A gene polymorphism predicts adolescent outcome of attention‐deficit/hyperactivity disorder
ReviewJun Li et al.(2007)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

This review examines molecular genetic studies of attention-deficit hyperactivity disorder (ADHD) in Han Chinese samples, including candidate gene studies, endophenotype research, genome-wide association studies, and pharmacogenomic investigations. Eight GWAS conducted for ADHD have been inconclusive with no genome-wide significant associations identified, though candidate gene studies have identified associations with dopaminergic (DAT1, DRD4, DRD2, DRD3), noradrenergic (NET1, ADRA2A, ADRA2C), serotonergic (SLC6A4, HTR genes), and metabolic pathway genes (COMT, MAOA, MAOB, DBH, TPH). A meta-analysis of DRD4 longer repeats showed OR=1.70-1.74 in males with ADHD-C subtype.

Traits studied:ADHD combined subtype (ADHD-C)ADHD primarily hyperactive/impulsive subtype (ADHD-HI)ADHD primarily inattentive subtype (ADHD-I)ADHD with comorbid disruptive behavior disorder (DBD)ADHD with comorbid learning disorderADHD with comorbid oppositional defiant disorder (ODD)ADHD with comorbid tic disorderAttention-deficit hyperactivity disorder (ADHD)Executive functionImpulsivityIntelligence quotient (IQ)Response inhibition

About SLC6A2

This gene encodes a member of the sodium:neurotransmitter symporter family. This member is a multi-pass membrane protein, which is responsible for reuptake of norepinephrine into presynaptic nerve terminals and is a regulator of norepinephrine homeostasis. Mutations in this gene cause orthostatic intolerance, a syndrome characterized by lightheadedness, fatigue, altered mentation and syncope. Alternatively spliced transcript variants encoding different isoforms have been identified in this gene.[provided by RefSeq, Feb 2010]

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Gene information from NCBI Gene. Variant classifications from ClinVar.

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