rs396991

This is a variant in the FCGR3A gene that changes a phenylalanine to an valine.

GWAS Catalog Trait Associations (6)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

serum albumin amount

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele A
OR 0.02
p 9.0e-12
N 542,272
Major Consortium StudyLarge GWAS
multi-ancestry

blood protein amount

Allele C
OR 0.17
p 4.0e-10
N 2,971
Large GWAS
European

erythrocyte count

Verma A et al. Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program. Science (new York, N.y.) 385(6706):eadj1182 (2024)
Allele A
OR 0.02
p 2.0e-16
N 581,827
Major Consortium StudyLarge GWAS
multi-ancestry

leukocyte quantity

Allele C
OR 0.30
p 2.0e-30
N 3,387
Large GWAS
European

ClinVar annotation

Likely Benign★★★
3 submitters2 publications

not specified

View on ClinVar →

Research that mentions this SNP (5)

FcɛR1α gene polymorphism shows association with high IgE and anti‐FcɛR1α in Chronic Rhinosinusitis with Nasal Polyposis
AssociationN=282Sajad A. Dar et al.(2018)· Journal of Cellular Biochemistry

A retrospective cohort study of 282 patients with severe uncontrolled asthma treated with omalizumab, mepolizumab, or benralizumab for 12 months evaluated genetic variants in 11 genes (IL1RL1, IL5, GATA2, IKZF2, RAD50, C3, FCER1A, FCER1B, FCGR2A, FCGR2B, FCGR3A) as predictors of response. Key findings: FCGR2B rs3219018-C, GATA2 rs4857855-T, and FCGR2A rs1801274-AG associated with improved lung function in omalizumab (p=0.052, 0.052, 0.012); IL1RL1 rs17026974-AG/GG associated with reduced exacerbations in omalizumab (p=0.040, 0.041); FCER1B rs569108-AA and FCGR2A rs1801274-GG associated with corticosteroid reduction in benralizumab; FCER1A rs2427837-A associated with improved lung function in mepolizumab (p=0.023).

Traits studied:Exacerbation reductionLung function improvementOral corticosteroid reductionResponse to benralizumabResponse to mepolizumabResponse to omalizumabSevere uncontrolled asthma
Association of Polymorphisms in FCGR2A and FCGR3A With Degree of Trastuzumab Benefit in the Adjuvant Treatment of ERBB2/HER2–Positive Breast Cancer
AssociationN=1,251Gavin PG et al.(2017)· JAMA Oncology

This retrospective analysis of the NSABP B-31 randomized trial (1,251 patients with node-positive HER2-positive breast cancer) examined the association between FCGR2A and FCGR3A polymorphisms and trastuzumab benefit. The FCGR3A-158 V/F polymorphism showed significant interaction with trastuzumab treatment: patients with V/V or V/F genotypes had substantially greater benefit from trastuzumab (HR 0.31, 95% CI 0.22-0.43, P<.001 for interaction), while F/F homozygotes showed minimal benefit (HR 0.71, 95% CI 0.51-1.01). FCGR2A-131 polymorphism showed a dose-response relationship but the interaction was not statistically significant.

Traits studied:HER2-positive breast cancerTrastuzumab response
Fcγ Receptor IIIa Single‐Nucleotide Polymorphisms and Haplotypes Affect Human IgG Binding and Are Associated With Lupus Nephritis in African Americans
AssociationN=4,132Chaoling Dong et al.(2014)· Arthritis &amp; Rheumatology

This study investigates FCGR3A variants (specifically positions 66 and 176) and their functional effects on human IgG binding in relation to systemic lupus erythematosus (SLE) and lupus nephritis. Using flow cytometry-based binding assays on transfected cells and genotyping of 1728 SLE patients and 2404 healthy controls, the authors found that the low binding haplotypes (66R/H/L and 176F combination) confer enhanced risk for lupus nephritis in African Americans (p=0.0609, OR=1.25, 95% CI 0.99-1.57), though FCGR3A copy number variations were not associated with SLE or nephritis.

Traits studied:Lupus nephritisSystemic lupus erythematosus (SLE)
Replication of the association between the C8orf13–BLK region and systemic lupus erythematosus in a Japanese population
ReviewIkue Ito et al.(2009)· Arthritis &amp; Rheumatism

This comprehensive review examines genetic associations in type I interferon-related signaling pathways across multiple autoimmune diseases. The authors review evidence linking dysregulated interferon alpha (IFNα) signaling to systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), and other autoimmune conditions, identifying multiple susceptibility genes including IFIH1, IRF5, STAT4, TYK2, BLK, BANK1, FCGR2A, and TREX1 with well-replicated associations and functional relevance to IFN pathway dysfunction.

Traits studied:Autoimmune Thyroid DiseaseCrohn's DiseaseDermatomyositisGiant Cell ArteritisGraves' DiseaseInflammatory Bowel DiseaseJuvenile Idiopathic ArthritisLupus NephritisMicroscopic PolyangiitisMultiple SclerosisPrimary Anti-Phospholipid SyndromePrimary Sjögren's SyndromePsoriasisRheumatoid ArthritisSclerodermaSystemic Lupus ErythematosusType 1 DiabetesUlcerative ColitisWegener's Granulomatosis
Features associated with, and the impact of, hemolytic anemia in patients with systemic lupus erythematosus: LX, results from a multiethnic cohort
AssociationN=628Sergio Durán et al.(2008)· Arthritis Care &amp; Research

This study examined hemolytic anemia in 628 SLE patients from the LUMINA multiethnic cohort, analyzing associations with FCGR and Fas/FasL polymorphisms and clinical outcomes. Key findings: FCGR2B-I131T, FasL-205, and FasL-844 polymorphisms showed association with hemolytic anemia; independent risk factors for hemolytic anemia included African American ethnicity (OR 4.21), thrombocytopenia (OR 2.38), and azathioprine use (OR 2.25). Hemolytic anemia was associated with damage accrual but not mortality.

Traits studied:Disease damage accrualHemolytic anemia in systemic lupus erythematosus (SLE)Mortality in SLE

About FCGR3A

This gene encodes a receptor for the Fc portion of immunoglobulin G, and it is involved in the removal of antigen-antibody complexes from the circulation, as well as other responses, including antibody dependent cellular mediated cytotoxicity and antibody dependent enhancement of virus infections. This gene (FCGR3A) is highly similar to another nearby gene (FCGR3B) located on chromosome 1. The receptor encoded by this gene is expressed on natural killer (NK) cells as an integral membrane glycoprotein anchored through a transmembrane peptide, whereas FCGR3B is expressed on polymorphonuclear neutrophils (PMN) where the receptor is anchored through a phosphatidylinositol (PI) linkage. Mutations in this gene are associated with immunodeficiency 20, and have been linked to susceptibility to recurrent viral infections, susceptibility to systemic lupus erythematosus, and alloimmune neonatal neutropenia. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2020]

View all FCGR3A variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

Community Wiki

No community notes yet for this variant. Sign in to start one.

Comments

Sign in to join the discussion.

Loading comments…