rs4657139

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

level of C-X-C motif chemokine 2 in blood serum

Allele T
OR 0.68
p 6.0e-12
N 466
Small GWAS
African American or Afro-Caribbean

Research that mentions this SNP (3)

Genetic association analysis highlights new loci that modulate hematological trait variation in Caucasians and African Americans
AssociationN=30,551Ken Sin Lo et al.(2011)· Human Genetics

Genetic association study in 23,439 Caucasians and 7,112 African Americans identified novel loci modulating hematological traits. G6PD rs1050828 (Val68Met) shows strong association with red blood cell count, hemoglobin, hematocrit, and mean corpuscular volume in African Americans (P < 2.0 × 10^−13), while TPM4 rs8109288 associates with platelet count in both Caucasians and African Americans (P = 3.0 × 10^−7). HBA2-HBA1 rs1211375 associates with red blood cell traits specifically in African Americans (P < 7 × 10^−8). Study replicated 36 previously reported associations and highlights ethnic differences in genetic architecture of blood traits.

Traits studied:Basophil countEosinophil countHematocritHemoglobinLymphocyte countMean corpuscular hemoglobinMean corpuscular hemoglobin concentrationMean corpuscular volumeMean platelet volumeMonocyte countNeutrophil countPlatelet countRed blood cell countWhite blood cell count
Association of genetic variants of NOS1AP with type 2 diabetes in a Chinese population
AssociationN=6,771Hu C. et al.(2010)· Diabetologia

This case-control study of 6,771 Chinese participants investigated the association between NOS1AP genetic variants and type 2 diabetes. In a two-stage analysis, SNP rs12742393 showed the strongest association with type 2 diabetes in stage 1 (OR 1.24, 95% CI 1.11–1.38, p=0.0002), though it did not reach significance in stage 2. Meta-analysis combining both stages (6,469 participants) confirmed a significant association (OR 1.17, 95% CI 1.07–1.26, p=0.0005), but the authors conclude NOS1AP likely plays only a minor role in type 2 diabetes susceptibility.

Traits studied:Type 2 diabetes
NOS1AP variant associated with incidence of type 2 diabetes in calcium channel blocker users in the Atherosclerosis Risk in Communities (ARIC) study
AssociationN=11,945Chu AY et al.(2010)· Diabetologia

In the ARIC study of 9,221 white and 2,724 African-American participants over 9 years of follow-up, rs10494366 in NOS1AP was validated as associated with reduced incidence of type 2 diabetes in calcium channel blocker (CCB) users (HR 0.57, 95% CI 0.35-0.92, p=0.016). The G allele was also associated with lower fasting glucose levels (p=0.037) in CCB users, and the association remained significant in time-dependent analysis (HR 0.70, 95% CI 0.49-0.99, p=0.036). No other NOS1AP variants showed significant associations after multiple testing correction.

Traits studied:Fasting glucoseQT intervalType 2 diabetes

This variant is in our database but has no known associations or PRS memberships yet.

Gene information from NCBI Gene. Variant classifications from ClinVar.

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