rs5030858

badMag 9.0

This is a splice region variant variant in the PAH gene.

Key Literature Trait Associations

Phenylketonuria

The rs5030858 A allele (p.Arg408Trp) is a well-established pathogenic variant in the PAH gene, uniformly classified as Pathogenic across all ClinVar submissions for phenylketonuria. In the largest epidemiological study of PKU to date (n=16,092 patients across 51 countries), c.1222C>T (p.Arg408Trp) was the most prevalent PAH variant, accounting for 22.2% of all disease alleles; homozygotes (p.[Arg408Trp];[Arg408Trp]) comprised 11.4% of all genotypes and present with classic severe PKU. The mutation is predominantly found in Eastern European and Balto-Slavic populations but occurs globally. Homozygous or compound heterozygous carriers present with markedly elevated blood phenylalanine, intellectual disability if untreated, and are generally BH4 non-responsive.

Hillert A et al. The Genetic Landscape and Epidemiology of Phenylketonuria. American Journal of Human Genetics (2020)
Allele A
OR
p
N 16,092
Preliminary work
multi-ancestry
Allele A
OR
p
N 694
Preliminary work
Russian
Allele A
OR
p
Candidate gene study
European

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

phenylalanine measurement

Allele G
OR 1.55
p 4.0e-198
N 115,030
Large GWAS
European

ClinVar annotation

Pathogenic★★★★
41 submitters52 publications

Inborn genetic diseases; PAH-related disorder; Phenylketonuria (PKU); See cases

View on ClinVar →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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