rs55703767

This variant is located in the COL4A3 gene.

GWAS Catalog Trait Associations (6)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

diabetic nephropathy

Salem RM et al. Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen. Journal of the American Society of Nephrology : Jasn 30(10):2000-2016 (2019)
Allele G
OR 1.27
p 5.0e-12
N 17,024
Large GWAS
European

albuminuria, stage 5 chronic kidney disease

Allele T
OR 0.82
p 4.0e-11
N 22,135
Meta-analysisLarge GWAS
European

albuminuria, diabetic nephropathy

Salem RM et al. Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen. Journal of the American Society of Nephrology : Jasn 30(10):2000-2016 (2019)
Allele G
OR 1.20
p 4.0e-10
N 19,300
Large GWAS
European

albuminuria

Salem RM et al. Genome-Wide Association Study of Diabetic Kidney Disease Highlights Biology Involved in Glomerular Basement Membrane Collagen. Journal of the American Society of Nephrology : Jasn 30(10):2000-2016 (2019)
Allele G
OR 1.28
p 9.0e-9
N 14,875
Large GWAS
European

ClinVar annotation

Benign★★★
11 submitters4 publications

not specified; Alport syndrome; not provided; Autosomal recessive Alport syndrome

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About COL4A3

Type IV collagen, the major structural component of basement membranes, is a multimeric protein composed of 3 alpha subunits. These subunits are encoded by 6 different genes, alpha 1 through alpha 6, each of which can form a triple helix structure with 2 other subunits to form type IV collagen. This gene encodes alpha 3. In the Goodpasture syndrome, autoantibodies bind to the collagen molecules in the basement membranes of alveoli and glomeruli. The epitopes that elicit these autoantibodies are localized largely to the non-collagenous C-terminal domain of the protein. A specific kinase phosphorylates amino acids in this same C-terminal region and the expression of this kinase is upregulated during pathogenesis. This gene is also linked to an autosomal recessive form of Alport syndrome. The mutations contributing to this syndrome are also located within the exons that encode this C-terminal region. Like the other members of the type IV collagen gene family, this gene is organized in a head-to-head conformation with another type IV collagen gene so that each gene pair shares a common promoter. [provided by RefSeq, Jun 2010]

View all COL4A3 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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