rs6323

badMag 3.5

This is a synonymous variant in the MAOA gene — it does not change the protein's amino acid sequence.

Key Literature Trait Associations

MAO-A Enzyme Activity

The MAO-A R297R variant (rs6323) is a synonymous SNP on the X chromosome (males are hemizygous). The T allele is associated with lower MAO-A enzyme expression, resulting in slower breakdown of serotonin, dopamine, and norepinephrine. This variant has been associated with altered stress response, ADHD susceptibility, and antidepressant response. The T allele is the more common allele globally (~65%).

Allele T
OR
p 6.0e-4
Candidate gene study
Allele T
OR
p 1.7e-7
N 1,079
Small GWAS
Chinese

Attention deficit hyperactivity disorder

Multiple independent candidate-gene studies have reported preferential association of the rs6323 G allele with ADHD diagnosis. A case-control study in Indo-Caucasoid subjects found significantly higher G-allele frequency in ADHD probands versus controls (p=0.0023), with further enrichment in comorbid conduct disorder and oppositional defiant disorder subgroups. A family-based study in 190 nuclear families confirmed preferential maternal transmission of the G allele to affected male probands (p=0.0001). A Taiwanese TDT study found the same G allele nominally associated with ADHD (OR=1.57, p=0.034). Evidence is limited to candidate-gene studies in Asian and South Asian cohorts without large GWAS replication.

Allele G
OR
p 1.0e-4
N 190
Candidate gene study
Indo-Caucasoid
Allele G
OR
p 2.3e-3
N 300
Candidate gene study
Indo-Caucasoid (Eastern India)
Allele G
OR 1.57
p 3.4e-2
N 212
Candidate gene study
Taiwanese

Antidepressant response

The minor T allele of rs6323 (tagging lower MAO-A activity) has been associated with poorer antidepressant response in two independent Chinese MDD cohort studies. In a pharmacogenomic study of 610 MDD patients, the rs6323 minor allele predicted worse venlafaxine response specifically in female patients. A separate study in 308 Han Chinese patients found a MAOA haplotype containing rs6323 significantly associated with antidepressant response in the total group and female subgroup. Both studies are limited to Chinese populations and lack large-scale replication, but converge on sex-specific effects consistent with X-linked MAOA regulation.

Allele T
OR
p
N 610
Preliminary work
Chinese
Allele T
OR
p
N 308
Candidate gene study
Chinese Han

Major depressive disorder

The rs6323 G allele has been implicated in major depressive disorder primarily through its effect on MAOA gene expression rather than disease susceptibility per se. A cis-phase interaction study found significantly elevated MAOA mRNA in male MDD patients who were rs6323-G carriers (5.28-fold, p=1.7×10⁻⁷) versus controls with the same genotype, suggesting that G-allele haplotypes dysregulate monoamine catabolism in disease states. A postpartum depression study in 591 Chinese women examined MAOA rs6323 but found no independent association after controlling for COMT variants. Evidence linking rs6323 directly to MDD susceptibility remains limited and population-specific.

Allele G
OR
p 1.7e-7
N 1,079
Small GWAS
Chinese
Ma J et al. [Postpartum depression: association with genetic polymorphisms of noradrenaline metabolic enzymes and the risk factors]. Nan Fang Yi Ke Da Xue Xue Bao = Journal of Southern Medical University (2019)
Allele G
OR
p
N 591
Preliminary work
Chinese Han

Schizophrenia

Associations between rs6323 and schizophrenia have been examined in several Asian cohorts with inconsistent results. A Japanese study in 1,685 subjects found a haplotype including rs6323 (9R-3R-T-C) significantly associated with schizophrenia in female patients (OR=2.17, p=0.0006 corrected). A Chinese study identified haplotypic associations (VNTR-rs6323, VNTR-rs1137070) with schizophrenia in women but no individual allele effect. A Korean study found no diagnosis-level association but noted rs6323 G allele linked to affective disturbances (blunted affect OR=2.25) in male schizophrenia patients. Overall, evidence is limited to sex-stratified haplotype analyses in Asian populations without GWAS replication.

Allele T
OR 2.17
p 6.0e-4
N 1,685
Preliminary work
Japanese
Yuhui Sun et al. Study of a possible role of the monoamine oxidase A (<i>MAOA</i>) gene in paranoid schizophrenia among a Chinese population American Journal of Medical Genetics Part B: Neuropsychiatric Genetics (2012)
Allele T
OR
p
N 1,122
Preliminary work
Chinese

Aggression

The rs6323 T allele has been associated with aggression in a Pakistani case-control study, where allele frequencies differed significantly between aggressive cases and controls (OR=1.51, p=0.015). In a study of Italian children with ADHD, homozygous rs6323 genotypes were enriched in ADHD cases (p=0.02), while heterozygous GT was associated with reduced ADHD and aggression risk. Evidence remains limited to small candidate-gene studies without cross-ethnic replication or genome-wide validation.

Allele T
OR
p 5.0e-2
N 160
Candidate gene study
Italian

ClinVar annotation

Benign★★★
6 submitters2 publications

Brunner syndrome (BRNRS); Inborn genetic diseases; not specified

View on ClinVar →

Research that mentions this SNP (8)

Testing for the mediating role of endophenotypes using molecular genetic data in a twin study of ADHD traits
AssociationN=1,312Rebecca Pinto et al.(2016)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A twin study of 1,312 children investigating genetic mediation of endophenotypes in ADHD. Using candidate gene SNPs from dopaminergic, noradrenergic, and serotonergic pathways, the study found the strongest association between rs7984966 in HTR2A and reaction time variability (P=0.007), and rs3785157 in SLC6A2 with commission errors. Mediation analyses revealed that commission errors mediated 38% of the SLC6A2-inattention association, and reaction time variability mediated 44% of the HTR2A-inattention association, suggesting these cognitive measures are intermediate phenotypes on the genetic pathway to ADHD.

Traits studied:ADHDCommission errorsHyperactivity-impulsivityInattentionReaction time variabilityReading difficulties
Association between catechol‐O‐methyl transferase gene polymorphisms and fibromyalgia in a Korean population: A case–control study
AssociationN=426Park DJ et al.(2016)· European Journal of Pain

This international doctoral thesis examined gene-physical activity interactions in fibromyalgia through six studies analyzing 64 SNPs across 34 candidate genes in Spanish women. The case-control study (314 fibromyalgia cases vs. 112 controls) identified associations of rs841 (GCH1), rs1799971 (OPRM1), and rs2097903 (COMT) with fibromyalgia susceptibility (p=0.04, p=0.02, and p=0.04 respectively). Cross-sectional studies (n=274-276 fibromyalgia patients) found that SCN9A rs4453709 and other genetic polymorphisms interacted with physical activity to influence pain, fatigue, and resilience outcomes.

Traits studied:Fatigue (reduced motivation, reduced activity)Fibromyalgia susceptibilityPain (algometry, bodily pain)Resilience (optimism, satisfaction with life)
MAOA and MAOB polymorphisms and anger-related traits in suicidal participants and controls
AssociationN=578Niki Antypa et al.(2013)· European Archives of Psychiatry and Clinical Neuroscience

This case-control study examined associations between MAOA and MAOB SNPs (rs909525, rs6323, rs2064070, rs1799836) and anger-related traits in 261 suicidal participants (171 attempters, 90 completers) and 317 healthy controls. Three MAOA variants showed significant associations with outward anger expression in males (p<0.001), with the rs909525 A allele associated with suicidality (p<0.007). The rs6323 C allele showed association with anger-out in females (p=0.002).

Traits studied:AggressionAnger-related traitsOutward anger expressionSuicidal behaviorSuicide attempt
Study of a possible role of the monoamine oxidase A (MAOA) gene in paranoid schizophrenia among a Chinese population
AssociationN=1,122Yuhui Sun et al.(2012)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A case-control study in a Chinese Han population examined the role of the MAOA gene in paranoid schizophrenia by genotyping 1 VNTR polymorphism and 41 SNPs in 555 patients and 567 controls. While individual SNP alleles showed marginal associations (e.g., rs6323-G: OR=0.81, p=0.03; rs1137070-C: OR=0.77, p=0.01), these did not survive multiple testing correction. Haplotypic analysis revealed significant associations in females, particularly for VNTR(L)-rs6323(T) (p=0.03, OR=1.78) and VNTR(L)-rs1137070(C) (p=0.02, OR=2.71) haplotypes showing increased schizophrenia risk. Gene expression analysis of MAOA mRNA in 73 drug-free patients found no significant differences by genotype, suggesting haplotypic interactions may contribute to disease susceptibility through mechanisms other than altered mRNA expression.

Traits studied:Paranoid schizophrenia
Converging evidence implicates the dopamine D3 receptor gene in vulnerability to schizophrenia
AssociationN=446Fuquan Zhang et al.(2011)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A pharmacogenetic study of 446 schizophrenic patients (221 males, 225 females) from West Siberia investigating associations between 41 SNPs in dopaminergic genes and antipsychotic-induced hyperprolactinemia. The study found rs1799836 in MAOB gene associated with hyperprolactinemia in males (OR=0.748, p=0.048), and rs40184 and rs3863145 in SLC6A3 gene associated with hyperprolactinemia in the risperidone/paliperidone subgroup (OR=0.341, p=0.021 and OR=0.362, p=0.043, respectively), indicating protective effects.

Traits studied:Antipsychotic-induced hyperprolactinemiaSchizophrenia
Association study of the serotoninergic system in migraine in the spanish population
FunctionalN=149Corominas R. et al.(2010)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Development and validation of a targeted NGS panel for diagnosing familial hemiplegic migraine (FHM), episodic ataxia type 2 (EA2), CADASIL, and migraine with aura. In 149 patients across 4 cohorts (55 FHM, 44 CADASIL, 31 EA2, 19 migraine families), the panel identified novel and known mutations in genes CACNA1A, ATP1A2, SCN1A, and NOTCH3, increasing mutation detection rate from 7.7% to 28.5%. Notably, ATP1A2 and NOTCH3 mutations were identified in typical migraine with aura families for the first time, demonstrating aetiological overlap with FHM.

Traits studied:CADASILEpisodic Ataxia Type 2Familial Hemiplegic MigraineMigraine with auraMigraine without auraSpinocerebellar ataxia type 6
DRD3, but not COMT or DRD2, genotype affects executive functions in healthy and first‐episode psychosis adolescents
AssociationN=446Igor Bombin et al.(2008)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

A pharmacogenetic association study of 446 schizophrenia patients from West Siberia examined 41 SNPs in dopamine pathway genes (DRD1, DRD2, DRD3, DRD4, SLC6A3, MAOA, MAOB) for association with antipsychotic-induced hyperprolactinemia (HPRL). rs1799836 in MAOB showed significant protective association with HPRL in men (OR=0.748, p=0.048), while rs40184 (OR=0.341, p=0.021) and rs3863145 (OR=0.362, p=0.043) in SLC6A3 showed protective effects specifically in risperidone/paliperidone-treated patients.

Traits studied:Antipsychotic-induced hyperprolactinemiaHyperprolactinemiaSchizophrenia
A Linkage Disequilibrium between Genes at the Serine Protease Inhibitor Gene Cluster on Chromosome 14q32.1 Is Associated with Wegener's Granulomatosis
AssociationN=350Stefan Borgmann et al.(2001)· Clinical Immunology

This doctoral thesis conducted multiple candidate gene association studies in 274-426 southern Spanish women with fibromyalgia to investigate gene-physical activity/sedentary behavior interactions with pain, fatigue, and resilience. Study III identified rs841 (GCH1) GG genotype (OR=0.61, p=0.04) and rs2097903 (COMT) AT/TT genotypes (OR=1.66, p=0.04) associated with fibromyalgia susceptibility, and confirmed rs1799971 (OPRM1) GG genotype (OR=0.58, p=0.02) confers genetic risk. Study IV found rs6311/rs6313 (HTR2A) polymorphisms individually associated with algometer pain score, and gene-sedentary behavior interactions involving rs4680/rs165599 (COMT), rs1383914 (ADRA1A), rs12994338/rs4453709 (SCN9A), and rs6860 (CHMP1A) significantly associated with pain outcomes. SCN9A emerged as most robust gene for fibromyalgia phenotype.

Traits studied:FatigueFibromyalgia susceptibilityPain (algometer pain threshold, bodily pain, pain catastrophizing, acute pain/VAS)Physical activity levelResilienceSedentary behavior

Gene information from NCBI Gene. Variant classifications from ClinVar.

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