rs6922269
This is a upstream gene variant variant in the MTHFD1L gene.
▶GWAS Catalog Trait Associations (1)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (1)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
coronary artery disease
▶Research that mentions this SNP (5)
▶Common genetic polymorphisms in Moyamoya and atherosclerotic disease in EuropeansAssociationN=108Constantin Roder et al.(2011)· Child's Nervous System
Case-control study of 40 European Moyamoya disease patients versus 68 controls found a significant association between rs599839 (A/G, OR=2.17, 95% CI=1.17-4.05, p=0.01) in the PSRC1 gene and Moyamoya disease, along with three additional SNPs showing borderline significance in ELN and CXCL12 genes. The findings suggest shared genetic pathways between Moyamoya disease and atherosclerotic disease.
▶Association studies of 22 candidate SNPs with late‐onset Alzheimer's diseaseAssociationN=2,019Figgins JA et al.(2009)· American Journal of Medical Genetics Part B: Neuropsychiatric Genetics
This replication study tested 22 candidate SNPs for association with late-onset Alzheimer's disease in 1,009 cases and 1,010 controls of Caucasian descent. While the primary analysis found no significant associations with AD risk, the study identified notable associations with age-at-onset (rs2074877 in MYH13, p=0.00196) and disease duration (rs41271951 in CTSS and rs41310885 in FAM63A, p=0.006 and p=0.0014, respectively).
▶The impact of newly identified loci on coronary heart disease, stroke and total mortality in the MORGAM prospective cohortsAssociationN=33,282Juha Karvanen et al.(2009)· Genetic Epidemiology
Prospective cohort study of 33,282 individuals from the MORGAM Project investigating SNPs from recent GWAS in relation to incident coronary heart disease (CHD), stroke, and total mortality. SNP rs1333049 (9p21.3) was associated with both CHD (HR=1.20, 95% CI 1.08-1.34) and stroke, rs11670734 (19q12) with total mortality and stroke, and several SNPs associated with lipid levels and blood pressure.
▶A common variant inMTHFD1Lis associated with neural tube defects and mRNA splicing efficiencyAssociationN=2,565Anne Parle-McDermott et al.(2009)· Human Mutation
A common deletion/insertion polymorphism rs3832406 (c.781-6823ATT(7-9)) in MTHFD1L is strongly associated with neural tube defects (NTDs), with Allele 2 showing decreased case risk (OR=0.72, P=0.002 case-control; P=0.001 TDT) and Allele 1 showing increased case risk. The variants influence splicing efficiency of MTHFD1L mRNA transcripts, with Allele 1 producing 1.4-fold higher levels of the functional long transcript variant (P=0.006).
▶The novel genetic variant predisposing to coronary artery disease in the region of the PSRC1 and CELSR2 genes on chromosome 1 associates with serum cholesterolAssociationN=3,974Nilesh J. Samani et al.(2008)· Journal of Molecular Medicine
This genome-wide association study investigated whether seven CAD-associated loci affect coronary artery disease risk through traditional cardiovascular risk factors. The study found that rs599839, located near PSRC1 and CELSR2 on chromosome 1p13.3, showed a strong association with serum cholesterol levels, with the risk allele A associated with 0.17 mmol/l higher total cholesterol per allele copy (P = 3.84 × 10⁻⁶) and 0.19 mmol/l higher LDL cholesterol (P = 8.56 × 10⁻⁵). This association was replicated in independent cohorts and the findings support further investigation of these genes in cholesterol metabolism and coronary risk.
About MTHFD1L
The protein encoded by this gene is involved in the synthesis of tetrahydrofolate (THF) in the mitochondrion. THF is important in the de novo synthesis of purines and thymidylate and in the regeneration of methionine from homocysteine. Several transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, Jun 2011]
View all MTHFD1L variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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