rs7528684

This variant is located in the FCRL3 gene.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

Fc receptor-like protein 3 measurement

Sun BB et al. Genomic atlas of the human plasma proteome. Nature 558(7708):73-79 (2018)
Allele G
OR 0.53
p 1.0e-112
N 3,301
Large GWAS
European

autoantibody measurement

Allele T
OR 1.45
p 8.0e-9
N 2,498
Large GWAS
European

Research that mentions this SNP (4)

Fc receptor-like 3 (FCRL3) −169 C/T polymorphism and systemic lupus erythematosus: a meta-analysis
Meta-analysisN=6,457Gwan Gyu Song et al.(2013)· Rheumatology International

Meta-analysis of nine case-control studies (2,544 patients, 3,913 controls) examining the FCRL3 -169 C/T polymorphism (rs7528684) and systemic lupus erythematosus (SLE) found no significant association overall (OR = 0.999, 95% CI = 0.925-1.080, p = 0.986) or in European and Asian subgroups. The polymorphism does not appear to confer SLE susceptibility in these populations, despite earlier findings in a Japanese population.

Traits studied:SLESystemic lupus erythematosus
Genetic association of zinc transporter 8 (ZnT8) autoantibodies in type 1 diabetes cases
AssociationN=3,094Howson JM et al.(2012)· Diabetologia

This genome-wide association study identifies genetic loci associated with zinc transporter 8 autoantibodies (ZnT8A) positivity in 2,239 type 1 diabetes cases. The FCRL3 locus on chromosome 1 (rs7522061 T>C, p=1.13×10⁻¹⁶, OR=1.82) and HLA class I region (rs9258750 A>G, p=2.06×10⁻⁹) show strong associations with ZnT8A. The SLC30A8 rs13266634 (R325W) shows epitope-specific associations: strong association with ZnT8WA (p=9.26×10⁻²⁷) and negative association with ZnT8RA (p=7.20×10⁻¹⁷). Notably, these ZnT8A-associated loci do not alter type 1 diabetes risk, indicating ZnT8A is a downstream biomarker rather than primary pathogenic factor.

Traits studied:Type 1 diabetesZinc transporter 8 autoantibodies (ZnT8A)ZnT8RA autoantibodiesZnT8WA autoantibodies
The FCRL3 −169CT promoter single‐nucleotide polymorphism, which is associated with systemic lupus erythematosus in a Japanese population, predicts expression of receptor protein on CD19+ B cells
AssociationN=2,650Andrew W. Gibson et al.(2009)· Arthritis &amp; Rheumatism

The FCRL3 -169C>T SNP (rs7528684) in the promoter region of the FCRL3 gene shows a dose-dependent effect on FCRL3 protein expression in B cells, with CC homozygotes expressing significantly higher levels than TT homozygotes (p < 0.0001) in both healthy donors and SLE patients. However, in contrast to prior association in Japanese populations, meta-analysis of four published studies found no significant association between this SNP and SLE in European Americans (N=2,220, OR=1.0478, p=0.45) or pan-Asian groups (N=4,267, OR=1.0616, p=0.412), suggesting ethnic-specific genetic effects.

Traits studied:Autoimmune disordersRheumatoid arthritis (RA)Systemic lupus erythematosus (SLE)
Features associated with, and the impact of, hemolytic anemia in patients with systemic lupus erythematosus: LX, results from a multiethnic cohort
AssociationN=628Sergio Durán et al.(2008)· Arthritis Care &amp; Research

This study examined hemolytic anemia in 628 SLE patients from the LUMINA multiethnic cohort, analyzing associations with FCGR and Fas/FasL polymorphisms and clinical outcomes. Key findings: FCGR2B-I131T, FasL-205, and FasL-844 polymorphisms showed association with hemolytic anemia; independent risk factors for hemolytic anemia included African American ethnicity (OR 4.21), thrombocytopenia (OR 2.38), and azathioprine use (OR 2.25). Hemolytic anemia was associated with damage accrual but not mortality.

Traits studied:Disease damage accrualHemolytic anemia in systemic lupus erythematosus (SLE)Mortality in SLE

About FCRL3

This gene encodes a member of the immunoglobulin receptor superfamily and is one of several Fc receptor-like glycoproteins clustered on the long arm of chromosome 1. The encoded protein contains immunoreceptor-tyrosine activation motifs and immunoreceptor-tyrosine inhibitory motifs in its cytoplasmic domain and may play a role in regulation of the immune system. Mutations in this gene have been associated with rheumatoid arthritis, autoimmune thyroid disease, and systemic lupus erythematosus. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]

View all FCRL3 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

Community Wiki

No community notes yet for this variant. Sign in to start one.

Comments

Sign in to join the discussion.

Loading comments…