rs9525641
This is a regulatory region variant variant in the TNFSF11 gene.
▶ClinVar annotation
▶Research that mentions this SNP (4)
▶Polymorphisms in genes in the RANKL/RANK/OPG pathway are associated with bone mineral density at different skeletal sites in post-menopausal womenAssociationN=874Tu P. et al.(2015)· Osteoporosis International
A cross-sectional study of 881 postmenopausal Chinese women examined associations between 22 SNPs in the RANKL/RANK/OPG pathway genes (TNFSF11, TNFRSF11A, TNFRSF11B) and bone mineral density (BMD). Two TNFSF11 SNPs (rs2277439 and rs2324851; p=0.014, 0.013) and one TNFRSF11A SNP (rs7239261; p=0.047) were significantly associated with femoral neck BMD. A haplotype in TNFSF11 was a genetic risk factor for lower femoral neck BMD (beta=-0.1473; p=0.011), while another was protective for lumbar spine BMD (beta=0.3923; p=0.049).
▶Gene-gene interaction between RBMS3 and ZNF516 influences bone mineral densityAssociationN=4,606Tie-Lin Yang et al.(2013)· Journal of Bone and Mineral Research
Gene-gene interaction study identifying pairwise SNP interactions influencing bone mineral density (BMD) in Caucasian and African samples. Discovery analysis in Kansas City (2,286) and Omaha (1,000) samples identified RBMS3 rs6549904 and rs7640046 interacting with ZNF516 rs4891159 with highly significant p-values (7.04×10⁻¹¹ and 1.03×10⁻¹⁰), with interaction ORs of 3.19-4.82. Replication in Framingham Heart Study confirmed findings (p=8.07×10⁻³ and p=2.91×10⁻³), though African American sample showed opposite directional effect, suggesting ancestry-dependent genetic architecture of osteoporosis.
▶A functional RANKL polymorphism associated with younger age at onset of rheumatoid arthritisAssociationN=1,589Tan W. et al.(2010)· Arthritis & Rheumatism
This study fine-mapped the RANKL locus and identified rs7984870 (CC genotype) as a functional promoter variant consistently associated with younger age of rheumatoid arthritis (RA) onset in seropositive (RF+ or ACPA+) patients across three independent cohorts (European American and African American). The C allele conferred approximately 2-fold higher plasma RANKL levels and increased promoter activity via binding to transcription factor SOX5, with mean associations of 8.2 years earlier RA onset in WCPR, 4.7 years in BRASS, and 6.7 years in CLEAR cohorts when combined with HLA-DRB1 shared epitope.
▶Association Analyses of RANKL/RANK/OPG Gene Polymorphisms with Femoral Neck Compression Strength Index Variation in CaucasiansAssociationN=1,873Shan-Shan Dong et al.(2009)· Calcified Tissue International
This association study of 1,873 subjects from 405 Caucasian nuclear families examined RANKL/RANK/OPG gene polymorphisms in relation to femoral neck compression strength index (fCSI). Three RANKL SNPs (rs12585014, rs7988338, rs2148073) were significantly associated with fCSI (P = 0.0007, 0.0007, and 0.0005, respectively) after Bonferroni correction, with a haplotype showing even stronger association (P = 0.0003). No significant associations were detected with bone mineral density, femoral neck width, or weight.
About TNFSF11
This gene encodes a member of the tumor necrosis factor (TNF) cytokine family which is a ligand for osteoprotegerin and functions as a key factor for osteoclast differentiation and activation. This protein was shown to be a dentritic cell survival factor and is involved in the regulation of T cell-dependent immune response. T cell activation was reported to induce expression of this gene and lead to an increase of osteoclastogenesis and bone loss. This protein was shown to activate antiapoptotic kinase AKT/PKB through a signaling complex involving SRC kinase and tumor necrosis factor receptor-associated factor (TRAF) 6, which indicated this protein may have a role in the regulation of cell apoptosis. Targeted disruption of the related gene in mice led to severe osteopetrosis and a lack of osteoclasts. The deficient mice exhibited defects in early differentiation of T and B lymphocytes, and failed to form lobulo-alveolar mammary structures during pregnancy. Two alternatively spliced transcript variants have been found. [provided by RefSeq, Jul 2008]
View all TNFSF11 variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
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