CLSTN2
calsyntenin 2
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in positive regulation of synapse assembly and positive regulation of synaptic transmission. Predicted to be located in several cellular components, including Golgi membrane; endoplasmic reticulum membrane; and postsynaptic density. Predicted to be active in cell surface; glutamatergic synapse; and postsynaptic density membrane. [provided by Alliance of Genome Resources, Apr 2025]
Known Variants98 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs1935001581 | 3:139,654,241 | G/T | — | uncertain significance |
| rs1026582954 | 3:139,654,259 | C/A | — | uncertain significance |
| rs1476195180 | 3:139,654,283 | G/A | — | uncertain significance |
| rs978086271 | 3:139,654,284 | G/A | — | uncertain significance |
| rs1935002818 | 3:139,654,292 | G/T | — | uncertain significance |
| rs567856555 | 3:139,662,860 | C/T | — | — |
| rs966866 | 3:139,682,048 | T/C | intron variant | — |
| rs6439886 | 3:139,682,495 | A/G | intron variant | — |
| rs140530726 | 3:139,697,132 | T/C | intron variant | — |
| rs7641534 | 3:139,700,752 | C/T | intron variant | — |
| rs9835073 | 3:139,701,001 | C/T | intron variant | — |
| rs34903090 | 3:139,703,395 | T/G | intron variant | — |
| rs566028903 | 3:139,764,951 | G/A | — | — |
| rs78681665 | 3:139,782,953 | T/C | intron variant | — |
| rs535243465 | 3:139,810,334 | C/G | — | — |
| rs190182631 | 3:139,816,338 | A/G | intron variant | — |
| rs115704274 | 3:139,834,681 | T/G | intron variant | — |
| rs572645244 | 3:139,839,826 | G/A | — | — |
| rs2474220739 | 3:139,894,889 | A/G | — | uncertain significance |
| rs3943277 | 3:140,084,789 | T/G | intron variant | — |
| rs17411949 | 3:140,099,693 | C/T | intron variant | — |
| rs149752767 | 3:140,102,775 | C/T | intron variant | — |
| rs72981079 | 3:140,122,463 | T/G | — | benign |
| rs375333353 | 3:140,122,552 | G/A | — | uncertain significance |
| rs74507604 | 3:140,122,610 | C/A | — | benign |
| rs200193660 | 3:140,122,617 | T/A | — | uncertain significance |
| rs759011249 | 3:140,122,629 | G/A | — | uncertain significance |
| rs368696603 | 3:140,122,640 | C/T | — | likely benign |
| rs762779163 | 3:140,123,572 | G/A | — | uncertain significance |
| rs759504921 | 3:140,123,581 | G/C | — | uncertain significance |
| rs748732785 | 3:140,139,990 | C/A | — | uncertain significance |
| rs778523990 | 3:140,139,995 | C/G | — | uncertain significance |
| rs768487663 | 3:140,140,078 | A/G | — | uncertain significance |
| rs756137891 | 3:140,167,396 | G/A | — | uncertain significance |
| rs201002193 | 3:140,167,423 | C/T | — | uncertain significance |
| rs1261844629 | 3:140,167,447 | G/A | — | uncertain significance |
| rs142015908 | 3:140,167,465 | G/A | — | uncertain significance |
| rs41265459 | 3:140,167,490 | T/A | — | likely benign |
| rs148820533 | 3:140,167,508 | G/A | — | uncertain significance |
| rs6439924 | 3:140,169,657 | A/C | intron variant | — |
| rs11708189 | 3:140,175,360 | G/A | upstream gene variant | — |
| rs17348572 | 3:140,178,381 | T/C | missense variant | — |
| rs142253668 | 3:140,178,410 | A/G | — | uncertain significance |
| rs374970030 | 3:140,178,464 | G/T | — | uncertain significance |
| rs764918816 | 3:140,178,487 | C/T | — | likely benign |
| rs983204874 | 3:140,178,548 | C/T | — | uncertain significance |
| rs779546467 | 3:140,178,550 | C/A | — | uncertain significance |
| rs747777857 | 3:140,178,559 | C/G | — | uncertain significance |
| rs771981536 | 3:140,185,463 | C/A | — | uncertain significance |
| rs1933710508 | 3:140,185,487 | A/C | — | uncertain significance |
| rs764474827 | 3:140,185,494 | G/A | — | uncertain significance |
| rs756866906 | 3:140,185,536 | C/T | — | uncertain significance |
| rs1047973426 | 3:140,185,548 | C/T | — | uncertain significance |
| rs773459967 | 3:140,185,566 | T/G | — | uncertain significance |
| rs9862730 | 3:140,223,794 | G/A | downstream gene variant | — |
| rs4683505 | 3:140,247,177 | C/T | intron variant | — |
| rs557069315 | 3:140,263,891 | G/T | — | — |
| rs754018895 | 3:140,265,375 | C/A | — | uncertain significance |
| rs747277859 | 3:140,265,408 | C/T | — | uncertain significance |
| rs202013971 | 3:140,265,423 | G/A | — | uncertain significance |
| rs1576621338 | 3:140,265,490 | T/C | — | likely benign |
| rs773100620 | 3:140,275,418 | C/T | — | uncertain significance |
| rs1175976437 | 3:140,275,439 | T/C | — | uncertain significance |
| rs1935798271 | 3:140,275,445 | A/C | — | uncertain significance |
| rs368537354 | 3:140,275,464 | C/T | — | uncertain significance |
| rs376157497 | 3:140,275,496 | A/G | — | uncertain significance |
| rs138834742 | 3:140,277,497 | C/T | — | likely benign |
| rs201837454 | 3:140,277,558 | C/T | — | uncertain significance |
| rs200746096 | 3:140,277,604 | A/C | — | uncertain significance |
| rs773408818 | 3:140,277,635 | C/A | — | uncertain significance |
| rs200466942 | 3:140,277,658 | C/A | — | uncertain significance |
| rs137889465 | 3:140,277,663 | G/A | — | uncertain significance |
| rs144701273 | 3:140,277,686 | C/T | — | benign |
| rs772974510 | 3:140,280,986 | A/T | — | uncertain significance |
| rs536861946 | 3:140,281,000 | G/A | — | uncertain significance |
| rs752600000 | 3:140,281,110 | C/G | — | uncertain significance |
| rs761770065 | 3:140,281,670 | C/T | — | uncertain significance |
| rs200855654 | 3:140,281,698 | G/A | — | uncertain significance |
| rs147446326 | 3:140,281,704 | G/A | — | conflicting classifications of pathogenicity |
| rs766788653 | 3:140,281,707 | A/G | — | uncertain significance |
| rs139860767 | 3:140,281,716 | C/T | — | uncertain significance |
| rs2107794455 | 3:140,281,757 | G/T | — | uncertain significance |
| rs35951028 | 3:140,281,768 | G/A | — | benign |
| rs373763672 | 3:140,281,770 | G/A | — | uncertain significance |
| rs1025564288 | 3:140,281,783 | T/G | — | uncertain significance |
| rs1188348761 | 3:140,281,925 | A/C | — | uncertain significance |
| rs201356149 | 3:140,281,972 | T/A | — | uncertain significance |
| rs2474663479 | 3:140,281,973 | C/G | — | uncertain significance |
| rs757923077 | 3:140,282,016 | A/C | — | uncertain significance |
| rs148840334 | 3:140,282,021 | C/T | — | uncertain significance |
| rs560530846 | 3:140,282,022 | G/A | — | likely benign |
| rs760764358 | 3:140,282,031 | T/C | — | uncertain significance |
| rs781242769 | 3:140,282,859 | G/C | — | uncertain significance |
| rs746334520 | 3:140,282,965 | C/T | — | uncertain significance |
| rs151107249 | 3:140,284,913 | C/T | — | uncertain significance |
| rs140202819 | 3:140,284,955 | G/A | — | conflicting classifications of pathogenicity |
| rs2474667029 | 3:140,285,036 | G/A | — | uncertain significance |
| rs16850556 | 3:140,290,141 | G/A | 3 prime UTR variant | — |
Gene information from NCBI Gene. Variant classifications from ClinVar.