SCAF1

SR-related CTD associated factor 1

Summary

Enables RNA polymerase II C-terminal domain binding activity. Predicted to be involved in RNA splicing; mRNA processing; and transcription by RNA polymerase II. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Jul 2025]

Known Variants112 total

rsid	Position (GRCh37)	Alleles	Class	ClinVar
rs12104272	19:50,148,052	G/A	upstream gene variant	—
rs114682662	19:50,148,328	G/C	—	benign
rs115252174	19:50,148,336	G/A	—	benign
rs199887823	19:50,148,611	C/G	—	uncertain significance
rs771378793	19:50,148,645	A/G	—	uncertain significance
rs775266614	19:50,148,660	A/T	—	uncertain significance
rs45513592	19:50,149,813	T/G	—	benign
rs771848268	19:50,149,825	A/G	—	uncertain significance
rs199544813	19:50,149,862	G/A	—	likely benign
rs151036254	19:50,149,873	C/T	—	uncertain significance
rs2513719861	19:50,150,022	A/G	—	uncertain significance
rs138792343	19:50,150,066	G/T	—	uncertain significance
rs2082481	19:50,151,226	G/A	intron variant	—
rs747053810	19:50,154,137	C/T	—	uncertain significance
rs138080693	19:50,154,164	G/C	—	uncertain significance
rs151252460	19:50,154,190	G/A	—	likely benign
rs373203311	19:50,154,216	C/A	—	likely benign
rs2081083325	19:50,154,284	C/T	—	uncertain significance
rs1368888363	19:50,154,290	C/T	—	uncertain significance
rs1481449133	19:50,154,298	C/T	—	uncertain significance
rs200937681	19:50,154,311	C/T	—	uncertain significance
rs1250066002	19:50,154,316	C/A	—	likely benign
rs755195310	19:50,154,367	C/T	—	uncertain significance
rs368577988	19:50,154,431	C/T	—	uncertain significance
rs142052897	19:50,154,459	G/C	—	likely benign
rs2513727180	19:50,154,493	G/T	—	uncertain significance
rs1555749064	19:50,154,495	C/G	—	likely benign
rs146455893	19:50,154,607	C/T	—	uncertain significance
rs749233252	19:50,154,650	C/T	—	uncertain significance
rs774235677	19:50,154,660	G/C	—	uncertain significance
rs769052585	19:50,154,665	A/G	—	uncertain significance
rs767194010	19:50,154,698	G/A	—	uncertain significance
rs2513728135	19:50,154,730	T/C	—	uncertain significance
rs770076860	19:50,154,733	C/T	—	uncertain significance
rs2122486125	19:50,154,758	T/G	—	uncertain significance
rs572089161	19:50,154,769	G/A	—	uncertain significance
rs2513728344	19:50,154,775	G/A	—	uncertain significance
rs777836368	19:50,154,805	G/A	—	uncertain significance
rs867079547	19:50,154,812	C/G	—	uncertain significance
rs1212804770	19:50,154,899	G/C	—	uncertain significance
rs2513729227	19:50,154,922	A/C	—	uncertain significance
rs1052619804	19:50,154,967	C/G	—	uncertain significance
rs2513729557	19:50,154,998	C/T	—	uncertain significance
rs1035195989	19:50,155,046	C/T	—	uncertain significance
rs960383623	19:50,155,052	C/T	—	uncertain significance
rs1323219707	19:50,155,072	C/T	—	uncertain significance
rs972168088	19:50,155,077	G/T	—	uncertain significance
rs1188197045	19:50,155,101	G/C	—	uncertain significance
rs1266318637	19:50,155,111	C/G	—	uncertain significance
rs2081093634	19:50,155,113	A/C	—	uncertain significance
rs2081095840	19:50,155,247	C/T	—	uncertain significance
rs1230905975	19:50,155,316	C/T	—	uncertain significance
rs748497181	19:50,155,357	C/T	—	uncertain significance
rs1176376830	19:50,155,399	C/T	—	uncertain significance
rs1427602537	19:50,155,400	G/A	—	uncertain significance
rs1160169227	19:50,155,403	G/C	—	uncertain significance
rs2513732567	19:50,155,418	A/C	—	uncertain significance
rs1026079741	19:50,155,426	C/T	—	uncertain significance
rs1373163829	19:50,155,436	G/T	—	uncertain significance
rs1335564259	19:50,155,490	C/A	—	uncertain significance
rs1336908740	19:50,155,693	C/T	—	uncertain significance
rs771601240	19:50,155,744	G/A	—	uncertain significance
rs1176254918	19:50,155,759	A/G	—	uncertain significance
rs756716435	19:50,155,786	G/A	—	uncertain significance
rs373236393	19:50,155,798	C/T	—	uncertain significance
rs369878803	19:50,155,804	C/G	—	uncertain significance
rs753706283	19:50,155,814	C/T	—	uncertain significance
rs746473987	19:50,155,817	C/T	—	uncertain significance
rs750717830	19:50,155,876	G/A	—	uncertain significance
rs2513735208	19:50,155,904	G/A	—	uncertain significance
rs748090581	19:50,155,913	C/T	—	uncertain significance
rs748984247	19:50,155,918	T/G	—	uncertain significance
rs1427669078	19:50,155,925	C/A	—	uncertain significance
rs2513735512	19:50,155,972	G/A	—	uncertain significance
rs2513735726	19:50,156,002	A/G	—	uncertain significance
rs759214591	19:50,156,016	G/T	—	uncertain significance
rs149228426	19:50,156,058	C/T	synonymous variant	—
rs2513736036	19:50,156,072	C/T	—	uncertain significance
rs1237388987	19:50,156,137	G/A	—	uncertain significance
rs1346429597	19:50,156,155	G/T	—	uncertain significance
rs2513736456	19:50,156,161	G/A	—	uncertain significance
rs371263226	19:50,156,167	A/T	—	uncertain significance
rs1219026133	19:50,156,248	C/G	—	uncertain significance
rs2081111632	19:50,156,292	G/T	—	likely benign
rs147051992	19:50,156,296	C/A	—	uncertain significance
rs2513737432	19:50,156,375	A/G	—	uncertain significance
rs775314326	19:50,156,398	A/G	—	uncertain significance
rs2513737717	19:50,156,443	A/G	—	uncertain significance
rs1194719361	19:50,156,480	C/T	—	uncertain significance
rs2513738267	19:50,156,567	C/T	—	likely benign
rs376117071	19:50,156,576	C/T	—	uncertain significance
rs200775447	19:50,156,581	C/G	—	uncertain significance
rs1432254299	19:50,156,660	C/G	—	uncertain significance
rs757982776	19:50,156,693	G/T	—	uncertain significance
rs760814202	19:50,156,737	G/C	—	uncertain significance
rs1320945706	19:50,156,770	C/T	—	uncertain significance
rs754476256	19:50,156,795	C/A	—	uncertain significance
rs768633107	19:50,156,828	C/T	—	uncertain significance
rs752209930	19:50,156,862	C/G	—	uncertain significance
rs201476531	19:50,156,901	C/G	—	likely benign

Showing 100 of 112 variants. Use the SNP search for the full list.

Gene information from NCBI Gene. Variant classifications from ClinVar.