SENP6
SUMO specific peptidase 6
Summary
Ubiquitin-like molecules (UBLs), such as SUMO1 (UBL1; MIM 601912), are structurally related to ubiquitin (MIM 191339) and can be ligated to target proteins in a similar manner as ubiquitin. However, covalent attachment of UBLs does not result in degradation of the modified proteins. SUMO1 modification is implicated in the targeting of RANGAP1 (MIM 602362) to the nuclear pore complex, as well as in stabilization of I-kappa-B-alpha (NFKBIA; MIM 164008) from degradation by the 26S proteasome. Like ubiquitin, UBLs are synthesized as precursor proteins, with 1 or more amino acids following the C-terminal glycine-glycine residues of the mature UBL protein. Thus, the tail sequences of the UBL precursors need to be removed by UBL-specific proteases, such as SENP6, prior to their conjugation to target proteins (Kim et al., 2000 [PubMed 10799485]). SENPs also display isopeptidase activity for deconjugation of SUMO-conjugated substrates (Lima and Reverter, 2008 [PubMed 18799455]).[supplied by OMIM, Jun 2009]
Known Variants69 total
| rsid | Position (GRCh37) | Alleles | Class | ClinVar |
|---|---|---|---|---|
| rs750797834 | 6:76,312,251 | G/C | — | uncertain significance |
| rs202125150 | 6:76,312,266 | G/T | — | uncertain significance |
| rs619920 | 6:76,322,300 | C/G | upstream gene variant | — |
| rs478934 | 6:76,325,096 | G/C | — | — |
| rs1768271678 | 6:76,331,292 | A/T | — | uncertain significance |
| rs34451237 | 6:76,331,308 | A/G | — | uncertain significance |
| rs761102583 | 6:76,331,337 | A/C | — | uncertain significance |
| rs534392708 | 6:76,334,853 | G/A | — | — |
| rs375205740 | 6:76,343,307 | G/A | — | likely benign |
| rs1252840267 | 6:76,343,360 | A/G | — | uncertain significance |
| rs370702962 | 6:76,343,430 | A/G | — | uncertain significance |
| rs780295357 | 6:76,344,503 | C/G | — | uncertain significance |
| rs518969 | 6:76,349,106 | A/T | — | — |
| rs2533866427 | 6:76,350,410 | C/T | — | likely benign |
| rs768193316 | 6:76,350,411 | G/A | — | likely benign |
| rs72886845 | 6:76,354,033 | G/A | downstream gene variant | — |
| rs1770566382 | 6:76,357,458 | C/T | — | uncertain significance |
| rs776030959 | 6:76,357,488 | C/T | — | uncertain significance |
| rs34486264 | 6:76,357,504 | G/T | — | benign |
| rs182107571 | 6:76,369,068 | A/G | — | uncertain significance |
| rs16886792 | 6:76,373,002 | G/A | — | benign |
| rs763256126 | 6:76,373,019 | C/T | — | uncertain significance |
| rs1182126883 | 6:76,373,043 | C/A | — | uncertain significance |
| rs373240602 | 6:76,373,160 | T/C | — | uncertain significance |
| rs2533945625 | 6:76,376,439 | A/G | — | uncertain significance |
| rs773071793 | 6:76,376,581 | G/A | — | likely benign |
| rs755189527 | 6:76,380,333 | A/T | — | uncertain significance |
| rs758306714 | 6:76,380,422 | A/G | — | uncertain significance |
| rs368978820 | 6:76,385,583 | C/A | — | likely benign |
| rs375932789 | 6:76,385,587 | G/T | — | uncertain significance |
| rs566485663 | 6:76,385,588 | A/T | — | uncertain significance |
| rs762121114 | 6:76,385,617 | G/C | — | uncertain significance |
| rs756490167 | 6:76,385,648 | G/A | — | uncertain significance |
| rs369219835 | 6:76,385,741 | A/G | — | uncertain significance |
| rs375606706 | 6:76,386,765 | A/G | — | uncertain significance |
| rs775394355 | 6:76,386,809 | T/G | — | uncertain significance |
| rs373276113 | 6:76,386,832 | A/C | — | uncertain significance |
| rs1773143430 | 6:76,386,874 | C/T | — | uncertain significance |
| rs1386220260 | 6:76,386,875 | C/G | — | uncertain significance |
| rs749486990 | 6:76,386,893 | G/A | — | uncertain significance |
| rs142325281 | 6:76,388,322 | A/G | — | likely benign |
| rs146034420 | 6:76,388,523 | A/T | — | benign |
| rs190783749 | 6:76,388,536 | A/G | — | likely benign |
| rs200061055 | 6:76,388,558 | G/A | — | uncertain significance |
| rs12175393 | 6:76,399,139 | A/C | intron variant | — |
| rs988494873 | 6:76,405,620 | C/T | — | uncertain significance |
| rs375230509 | 6:76,407,146 | A/G | — | uncertain significance |
| rs9343314 | 6:76,408,950 | G/A | intron variant | — |
| rs34489326 | 6:76,411,481 | A/G | intron variant | — |
| rs9343317 | 6:76,411,843 | G/A | intron variant | — |
| rs201057204 | 6:76,412,455 | A/G | — | uncertain significance |
| rs2534049132 | 6:76,412,594 | C/A | — | uncertain significance |
| rs771752341 | 6:76,412,618 | G/A | — | uncertain significance |
| rs746891323 | 6:76,412,634 | A/G | — | uncertain significance |
| rs2534049264 | 6:76,412,640 | T/A | — | uncertain significance |
| rs766690644 | 6:76,412,675 | C/T | — | uncertain significance |
| rs758256014 | 6:76,412,737 | A/G | — | uncertain significance |
| rs533274763 | 6:76,412,756 | A/G | — | uncertain significance |
| rs2842572 | 6:76,413,831 | G/A | intron variant | — |
| rs9343318 | 6:76,414,150 | A/G | intron variant | — |
| rs6921970 | 6:76,418,588 | C/T | intron variant | — |
| rs2534073257 | 6:76,421,053 | A/G | — | uncertain significance |
| rs1775973127 | 6:76,425,109 | T/G | — | uncertain significance |
| rs917934991 | 6:76,425,128 | A/G | — | uncertain significance |
| rs764460022 | 6:76,425,156 | C/T | — | uncertain significance |
| rs73458808 | 6:76,425,186 | G/A | — | uncertain significance |
| rs963354604 | 6:76,425,294 | A/C | — | uncertain significance |
| rs2534083717 | 6:76,425,306 | A/G | — | uncertain significance |
| rs276683 | 6:76,426,402 | G/A | 3 prime UTR variant | — |
Gene information from NCBI Gene. Variant classifications from ClinVar.