rs1033667

This variant is located in the CHEK2 gene.

GWAS Catalog Trait Associations (5)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

bilirubin measurement

Allele T
OR 0.01
p 2.0e-13
N 394,642
Large GWAS
European

testosterone measurement

Allele T
OR 0.02
p 9.0e-13
N 194,453
Large GWAS
European

esophageal squamous cell carcinoma

Allele T
OR 1.84
p 1.0e-9
N 9,617
Large GWAS
multi-ancestry

optic cup area

Allele T
OR 0.03
p 4.0e-16
N 17,218
Meta-analysisLarge GWAS
multi-ancestry

sex hormone-binding globulin measurement

Allele T
OR 0.02
p 3.0e-8
N 196,901
Large GWAS
European
Allele T
OR 0.01
p 3.0e-12
N 188,908
Large GWAS
European

ClinVar annotation

Benign★★★
2 submitters1 publication
View on ClinVar →

About CHEK2

In response to DNA damage and replication blocks, cell cycle progression is halted through the control of critical cell cycle regulators. The protein encoded by this gene is a cell cycle checkpoint regulator and putative tumor suppressor. It contains a forkhead-associated protein interaction domain essential for activation in response to DNA damage and is rapidly phosphorylated in response to replication blocks and DNA damage. When activated, the encoded protein is known to inhibit CDC25C phosphatase, preventing entry into mitosis, and has been shown to stabilize the tumor suppressor protein p53, leading to cell cycle arrest in G1. In addition, this protein interacts with and phosphorylates BRCA1, allowing BRCA1 to restore survival after DNA damage. Mutations in this gene have been linked with Li-Fraumeni syndrome, a highly penetrant familial cancer phenotype usually associated with inherited mutations in TP53. Also, mutations in this gene are thought to confer a predisposition to sarcomas, breast cancer, and brain tumors. This nuclear protein is a member of the CDS1 subfamily of serine/threonine protein kinases. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]

View all CHEK2 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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