rs11012

This is a upstream gene variant variant in the PLEKHM1 gene.

GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

systemic lupus erythematosus

Allele C
OR 0.07
p 6.0e-9
N 718,496
Large GWAS
multi-ancestry

Research that mentions this SNP (2)

Replication of MAPT and SNCA, but not PARK16‐18, as susceptibility genes for Parkinson's disease
AssociationN=2,606Ignacio F. Mata et al.(2011)· Movement Disorders

This replication study of 1,445 Parkinson's disease patients and 1,161 controls from Northern Spain confirms MAPT (rs1800547, p=3.1×10⁻⁴, OR=0.79) and SNCA (rs356219, p=5.5×10⁻⁴, OR=1.23) as PD susceptibility genes, but fails to replicate PARK16, PARK17, and PARK18 loci (p values 0.09-0.88). The findings suggest that PARK16-18 may harbor population-specific effects or require larger sample sizes for detection in European-derived populations.

Traits studied:Parkinson's disease
Genomewide association study for susceptibility genes contributing to familial Parkinson disease
AssociationN=1,724Nathan Pankratz et al.(2009)· Human Genetics

First genome-wide association study (GWAS) of familial Parkinson disease in 857 cases and 867 controls identified association with SNPs in GAK/DGKQ (p=3.4×10⁻⁶, OR=1.69), SNCA (p=5.5×10⁻⁵, OR=1.35), and MAPT (p=2.0×10⁻⁵, OR=0.56). Meta-analysis with Fung et al. strengthened evidence for GAK/DGKQ (p=2.5×10⁻⁷) and MAPT regions, confirming previously implicated genes and nominating new susceptibility loci for PD.

Traits studied:Parkinson diseasefamilial Parkinson disease

About PLEKHM1

The protein encoded by this gene is essential for bone resorption, and may play a critical role in vesicular transport in the osteoclast. Mutations in this gene are associated with autosomal recessive osteopetrosis type 6 (OPTB6). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2009]

View all PLEKHM1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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