rs11248051
This variant is located in the GAK gene.
▶GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
GWAS Catalog Trait Associations (2)
Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.
Parkinson disease
high density lipoprotein cholesterol measurement
▶Research that mentions this SNP (4)
▶Meta‐analysis of Parkinson's Disease: Identification of a novel locus, RIT2Meta-analysisN=14,326Nathan Pankratz et al.(2012)· Annals of Neurology
Meta-analysis of five Parkinson disease GWAS studies (4,238 cases, 4,239 controls) identifying a novel susceptibility locus at RIT2 (rs12456492, OR=1.19, p=2×10⁻¹⁰). Multiple independent associations detected at SNCA (rs356220, rs356198), GBA (E326K and N370S variants), and other loci including GAK/DGKQ, MAPT, and HLA region. Results replicated in 3,738 cases and 2,111 controls.
▶GWAS-linked GAK locus in Parkinson’s disease in Han Chinese and meta-analysisAssociationN=1,574Nan-Nan Li et al.(2012)· Human Genetics
This case-control study in 1,574 Han Chinese subjects (812 PD patients, 762 controls) demonstrates that the rs1564282 variant in GAK is associated with increased Parkinson's disease risk (OR=1.34-1.59 depending on model, P=0.007-0.017). A meta-analysis combining this result with published data confirmed the association across populations (OR=1.31, 95% CI=1.19-1.44, P<0.00001), though clinical features and motor severity were similar between carriers and non-carriers.
▶Replication of MAPT and SNCA, but not PARK16‐18, as susceptibility genes for Parkinson's diseaseAssociationN=2,606Ignacio F. Mata et al.(2011)· Movement Disorders
This replication study of 1,445 Parkinson's disease patients and 1,161 controls from Northern Spain confirms MAPT (rs1800547, p=3.1×10⁻⁴, OR=0.79) and SNCA (rs356219, p=5.5×10⁻⁴, OR=1.23) as PD susceptibility genes, but fails to replicate PARK16, PARK17, and PARK18 loci (p values 0.09-0.88). The findings suggest that PARK16-18 may harbor population-specific effects or require larger sample sizes for detection in European-derived populations.
▶Genomewide association study for susceptibility genes contributing to familial Parkinson diseaseAssociationN=1,724Nathan Pankratz et al.(2009)· Human Genetics
First genome-wide association study (GWAS) of familial Parkinson disease in 857 cases and 867 controls identified association with SNPs in GAK/DGKQ (p=3.4×10⁻⁶, OR=1.69), SNCA (p=5.5×10⁻⁵, OR=1.35), and MAPT (p=2.0×10⁻⁵, OR=0.56). Meta-analysis with Fung et al. strengthened evidence for GAK/DGKQ (p=2.5×10⁻⁷) and MAPT regions, confirming previously implicated genes and nominating new susceptibility loci for PD.
About GAK
In all eukaryotes, the cell cycle is governed by cyclin-dependent protein kinases (CDKs), whose activities are regulated by cyclins and CDK inhibitors in a diverse array of mechanisms that involve the control of phosphorylation and dephosphorylation of Ser, Thr or Tyr residues. Cyclins are molecules that possess a consensus domain called the 'cyclin box.' In mammalian cells, 9 cyclin species have been identified, and they are referred to as cyclins A through I. Cyclin G is a direct transcriptional target of the p53 tumor suppressor gene product and thus functions downstream of p53. GAK is an association partner of cyclin G and CDK5. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Dec 2015]
View all GAK variants →Gene information from NCBI Gene. Variant classifications from ClinVar.
Community Wiki
No community notes yet for this variant. Sign in to start one.
Comments
Sign in to join the discussion.
Loading comments…