rs1127354

This is a variant in the ITPA gene that changes a proline to an threonine.

GWAS Catalog Trait Associations (4)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

protein measurement

Pietzner M et al. Mapping the proteo-genomic convergence of human diseases. Science (new York, N.y.) 374(6569):eabj1541 (2021)
Allele A
OR 1.51
p
N 10,708
Large GWAS
European
Allele A
OR 1.65
p 6.0e-241
N 2,721
Large GWAS
European
Allele A
OR
p 2.0e-8
N 272
Small GWAS
European

chronic hepatitis C virus infection

Allele A
OR
p 2.0e-58
N 1,286
Large GWAS
multi-ancestry

level of inosine triphosphate pyrophosphatase in blood serum

Allele A
OR 1.27
p 1.0e-22
N 466
Small GWAS
African American or Afro-Caribbean

ClinVar annotation

Drug Response★★★★
6 submitters21 publications

Inosine triphosphatase deficiency; not specified; peginterferon alfa-2b and ribavirin response - Toxicity

View on ClinVar →

Research that mentions this SNP (7)

Add‐on therapy of pitavastatin and eicosapentaenoic acid improves outcome of peginterferon plus ribavirin treatment for chronic hepatitis C
AssociationN=277Motoyuki Kohjima et al.(2013)· Journal of Medical Virology

This study evaluated add-on therapy with pitavastatin and eicosapentaenoic acid (EPA) combined with peginterferon and ribavirin for chronic hepatitis C 1b treatment. In patients with HCV-1b, the add-on group achieved significantly higher sustained virological response rates (54.7%) compared to standard therapy (30.1%, P<0.0001). Patients with IL-28B rs8099917 TT genotype had better responses overall, while those with TG+GG genotype benefited markedly from add-on therapy (37.9% vs 5.6%, P=0.007). IL-28B genotype remained the strongest independent predictor in multivariate analysis (OR 6.69, P=0.0019).

Traits studied:Hepatitis C treatment responseHepatitis C virus infection (HCV-1b)Sustained virological response
Model incorporating the ITPA genotype identifies patients at high risk of anemia and treatment failure with pegylated‐interferon plus ribavirin therapy for chronic hepatitis C
AssociationN=446Masayuki Kurosaki et al.(2013)· Journal of Medical Virology

Model incorporating the ITPA genotype (rs1127354) identifies patients at high risk of anemia and treatment failure with pegylated-interferon plus ribavirin therapy for chronic hepatitis C. In 446 genotype 1b HCV patients, ITPA CC genotype combined with baseline hemoglobin <14.0 g/dl predicted 57% anemia incidence, while patients with ITPA AA/CA and hemoglobin ≥14.0 g/dl had only 17% incidence. High-risk anemia was a significant negative predictor of sustained virological response.

Traits studied:Anemia risk during hepatitis C treatmentSustained virological responseTreatment failure
ITPA gene polymorphisms significantly affect hemoglobin decline and treatment outcomes in patients coinfected with HIV and HCV
AssociationN=121Anu Osinusi et al.(2012)· Journal of Medical Virology

This study examined ITPA gene polymorphisms (rs1127354 and rs7270101) in 121 patients with HIV/HCV coinfection (n=63) and HCV monoinfection (n=58) treated with pegIFN/RBV. ITPA deficiency was found protective against hemoglobin reduction >3 g/dl (P=0.020 at week 4 in coinfected patients) and was associated with rapid virologic response at week 4 (P=0.017) in HIV/HCV coinfected patients, but did not improve sustained virologic response.

Traits studied:Hemoglobin declineRBV-induced hemolytic anemiaTreatment response to pegIFN/RBV in HCV
Association of IL28B genotype and viral response of hepatitis C virus genotype 2 to interferon plus ribavirin combination therapy
AssociationN=381Norio Akuta et al.(2012)· Journal of Medical Virology

In 381 Japanese patients with HCV genotype 2 treated with 24-week interferon plus ribavirin combination therapy, IL28B rs8099917 genotype TG+GG was identified as an independent predictor of non-sustained virological response (P=0.017, OR=3.95). Sustained virological response was achieved in 81.6% overall, with multivariate analysis identifying younger age, higher albumin, absence of prior IFN therapy, and lower viral load as additional significant predictors of treatment success.

Traits studied:Hepatitis C virus genotype 2 sustained virological response to interferon-ribavirin therapyRapid virological response to interferon-ribavirin therapy
Inosine triphosphatase genetic variants are protective against anemia during antiviral therapy for HCV2/3 but do not decrease dose reductions of RBV or increase SVR
AssociationN=238Alexander J. Thompson et al.(2011)· Hepatology

Two functional ITPA gene variants (rs1127354 and rs7270101) were strongly protective against ribavirin-induced hemolytic anemia in 238 HCV genotype 2/3 patients treated with pegylated interferon and ribavirin (P=10^-6 and P=10^-7 respectively; combined P=10^-11). Despite protection from anemia, ITPA variants did not decrease the need for ribavirin dose reduction or improve sustained virological response.

Traits studied:Hepatitis C virus infectionRibavirin-induced hemolytic anemiaSustained virological response
Limited use of interleukin 28B in the setting of response-guided treatment with detailed on-treatment virological monitoring
ReviewAlessandra Mangia et al.(2011)· Hepatology

This is a special issue of the Italian medical journal BeAdfiles (September 2012) dedicated to genetic conditioning in HIV and hepatitis virus infections. It reviews the major genetic polymorphisms that influence disease progression, treatment response, and drug toxicity in HIV and chronic hepatitis B and C infections, with particular emphasis on IL28B polymorphisms (rs809917 and others) predicting HCV treatment response to interferon-alpha and ribavirin therapy, and ITPA gene variants protecting against ribavirin-induced anemia. The issue also covers pharmacogenetic markers (CYP2B6, ABCB1, HLA-B*5701) and their clinical applications in antiretroviral therapy.

Traits studied:AIDS progressionAntiretroviral therapy toxicityChronic hepatitis C sustained virological responseCreutzfeldt-Jakob diseaseDyslipidemiaEfavirenz side effectsHIV infection and progressionHepatitis B virus infectionHepatitis C genotype 1 response to interferonHepatitis C virus infectionHyperbilirubinemiaLeprosyLipodystrophyNeisseria meningitidis infectionNorovirus diarrheaPlasmodium falciparum malariaPlasmodium vivax malariaRenal impairmentRibavirin-induced anemiaTreatment response to interferon and ribavirinTuberculosis
Influence of ITPA polymorphisms on decreases of hemoglobin during treatment with pegylated interferon, ribavirin, and telaprevir
AssociationN=61Fumitaka Suzuki et al.(2011)· Hepatology

This study examined ITPA gene polymorphisms (rs1127354) and their influence on hemoglobin decreases during triple therapy with pegylated interferon, ribavirin, and telaprevir in 61 Japanese patients with hepatitis C virus genotype 1. Patients with the CC genotype at rs1127354 experienced significantly greater hemoglobin reductions (Δ-3.5 ± 1.1 g/dL at week 4, P=0.001) compared to CA/AA genotypes, required more RBV dose reductions during the first 12 weeks (52% vs 65% of target dose, P=0.039), and had higher risk for severe anemia (OR=36.8 for hemoglobin <11 g/dL). SVR rates were comparable between genotypes (71% vs 67%, P=0.736), demonstrating that with careful monitoring and dose adjustment, effective HCV treatment can be achieved despite genetic predisposition to RBV-induced anemia.

Traits studied:Hemoglobin decrease during antiviral therapyHepatitis C virus response to triple therapyRibavirin-induced anemia

About ITPA

This gene encodes an inosine triphosphate pyrophosphohydrolase. The encoded protein hydrolyzes inosine triphosphate and deoxyinosine triphosphate to the monophosphate nucleotide and diphosphate. This protein, which is a member of the HAM1 NTPase protein family, is found in the cytoplasm and acts as a homodimer. Defects in the encoded protein can result in inosine triphosphate pyrophosphorylase deficiency which causes an accumulation of ITP in red blood cells. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jun 2012]

View all ITPA variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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