rs11890028

This variant is located in the SCN1A gene.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

epilepsy

Song M et al. Genome-Wide Meta-Analysis Identifies Two Novel Risk Loci for Epilepsy. Frontiers in Neuroscience 15:722592 (2021)
Allele T
OR 1.08
p 8.0e-13
N 800,869
Meta-analysisLarge GWAS
multi-ancestry

generalised epilepsy

Allele T
OR
p 2.0e-8
N 59,945
Meta-analysisLarge GWAS
multi-ancestry

About SCN1A

Voltage-dependent sodium channels are heteromeric complexes that regulate sodium exchange between intracellular and extracellular spaces and are essential for the generation and propagation of action potentials in muscle cells and neurons. Each sodium channel is composed of a large pore-forming, glycosylated alpha subunit and two smaller beta subunits. This gene encodes a sodium channel alpha subunit, which has four homologous domains, each of which contains six transmembrane regions. Allelic variants of this gene are associated with generalized epilepsy with febrile seizures and epileptic encephalopathy. Alternative splicing results in multiple transcript variants. The RefSeq Project has decided to create four representative RefSeq records. Three of the transcript variants are supported by experimental evidence and the fourth contains alternate 5' untranslated exons, the exact combination of which have not been experimentally confirmed for the full-length transcript. [provided by RefSeq, Oct 2015]

View all SCN1A variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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