rs12239046

This variant is located in the NLRP3 gene.

GWAS Catalog Trait Associations (13)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

C-reactive protein measurement

Allele C
OR 0.04
p 1.0e-87
N 575,531
Large GWAS
European
Allele C
OR 0.04
p 6.0e-25
N 148,164
Large GWAS
European
Allele C
OR 0.05
p 1.0e-15
N 66,185
Meta-analysisLarge GWAS
European

neutrophil count

Sakaue S et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics 53(10):1415-1424 (2021)
Allele C
OR 0.03
p 2.0e-30
N 432,666
Large GWAS
multi-ancestry
Kachuri L et al. Genetic determinants of blood-cell traits influence susceptibility to childhood acute lymphoblastic leukemia. American Journal of Human Genetics 108(10):1823-1835 (2021)
Allele C
OR
p 8.0e-16
N 234,802
Large GWAS
European
Allele C
OR 0.03
p 3.0e-19
N 170,702
Large GWAS
European

alkaline phosphatase measurement

Allele C
OR 0.02
p 1.0e-26
N 394,642
Large GWAS
European

leukocyte quantity

Sakaue S et al. A cross-population atlas of genetic associations for 220 human phenotypes. Nature Genetics 53(10):1415-1424 (2021)
Allele C
OR 0.02
p 1.0e-26
N 504,825
Large GWAS
multi-ancestry
Allele C
OR 0.03
p 6.0e-18
N 172,435
Large GWAS
European

serum albumin amount

Zoodsma M et al. A genetic map of human metabolism across the allele frequency spectrum. Nature Genetics 57(10):2445-2455 (2025)
Allele C
OR 0.02
p 3.0e-20
N 450,015
Large GWAS
multi-ancestry

neutrophil count, eosinophil count

Allele C
OR 0.03
p 3.0e-19
N 170,384
Large GWAS
European

myeloid leukocyte count

Allele C
OR 0.03
p 1.0e-18
N 169,219
Large GWAS
European

granulocyte count

Allele C
OR 0.03
p 2.0e-18
N 169,822
Large GWAS
European

neutrophil count, basophil count

Allele C
OR 0.03
p 2.0e-18
N 170,143
Large GWAS
European

body height

Allele T
OR 0.00
p 7.0e-12
N 5,314,291
Large GWAS
European, Hispanic or Latin American, East Asian, African unspecified, South Asian

About NLRP3

This gene encodes a pyrin-like protein containing a pyrin domain, a nucleotide-binding site (NBS) domain, and a leucine-rich repeat (LRR) motif. This protein interacts with the apoptosis-associated speck-like protein PYCARD/ASC, which contains a caspase recruitment domain, and is a member of the NLRP3 inflammasome complex. This complex functions as an upstream activator of NF-kappaB signaling, and it plays a role in the regulation of inflammation, the immune response, and apoptosis. The SARS-CoV 3a protein, a transmembrane pore-forming viroporin, has been shown to activate the NLRP3 inflammasome via the formation of ion channels in macrophages. Mutations in this gene are associated with familial cold autoinflammatory syndrome (FCAS), Muckle-Wells syndrome (MWS), chronic infantile neurological cutaneous and articular (CINCA) syndrome, neonatal-onset multisystem inflammatory disease (NOMID), keratoendotheliitis fugax hereditarian, and deafness, autosomal dominant 34, with or without inflammation. Multiple alternatively spliced transcript variants encoding distinct isoforms have been identified for this gene. Alternative 5' UTR structures are suggested by available data; however, insufficient evidence is available to determine if all of the represented 5' UTR splice patterns are biologically valid. [provided by RefSeq, Aug 2020]

View all NLRP3 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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