rs13321

This is a variant in the TNC gene that changes a glutamate to an glutamine.

GWAS Catalog Trait Associations (2)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

tenascin measurement

Allele G
OR 0.09
p 1.0e-56
N 47,745
Large GWAS
European

protein measurement

Pietzner M et al. Mapping the proteo-genomic convergence of human diseases. Science (new York, N.y.) 374(6569):eabj1541 (2021)
Allele C
OR 0.12
p 1.0e-15
N 10,708
Large GWAS
European

ClinVar annotation

Benign★★★
4 submitters1 publication

Autosomal dominant nonsyndromic hearing loss 56

View on ClinVar →

Research that mentions this SNP (3)

Exploring new genetic variants within COL5A1 intron 4‐exon 5 region and TGF‐β family with risk of anterior cruciate ligament ruptures
ReviewN=9,720Mary‐Jessica N. Laguette et al.(2020)· Journal of Orthopaedic Research

This systematic review analyzed 24 studies examining 31 genes and 62 genetic variants associated with anterior cruciate ligament rupture (ACLR). Key findings show mixed evidence for collagen variants: COL1A1 rs1800012 showed protective association in European ancestry populations (OR=2.8, p=0.040), while COL1A2 rs42524 and rs2621215 conferred increased risk (OR=5.73 and 4.29 respectively). VEGFA polymorphisms rs2010963 and rs699947 showed conflicting associations across studies, and most major variants in IL6, IL1B, MMP genes, and inflammatory markers showed no consistent associations with ACLR across populations, highlighting the need for gender and ancestry-stratified analyses.

Traits studied:Anterior cruciate ligament injury (ACLI)Anterior cruciate ligament rupture (ACLR)
Investigation of variants within the COL27A1 and TNC genes and Achilles tendinopathy in two populations
AssociationN=890Colleen J. Saunders et al.(2013)· Journal of Orthopaedic Research

PhD dissertation examining genetic variants in collagen genes (COL22A1, COL27A1, COL11A1) and anterior cruciate ligament injury risk in Polish athletes. Paper 1 is a systematic review of genetic determinants of ACL rupture. Papers 2 and 3 are case-control association studies finding no significant associations between SNPs rs11784270/rs6577958 (COL22A1), rs946053 (COL27A1), and rs3753841 (COL11A1) and non-contact ACL injury risk in Polish athletes.

Traits studied:ACL ruptureAnterior cruciate ligament injuryNon-contact ACL injury
Polymorphic variants in tenascin-C (TNC) are associated with atherosclerosis and coronary artery disease
AssociationN=2,409Mollie A. Minear et al.(2011)· Human Genetics

This study identifies polymorphic variants in tenascin-C (TNC) associated with atherosclerosis and coronary artery disease across three independent datasets. Three SNPs (rs3789875, rs12347433, and rs4452883) in high linkage disequilibrium were significantly associated with disease risk, with the strongest evidence for rs3789875 (p=2×10⁻⁶, OR=3.4-4.5) and rs12347433 (p=5×10⁻⁶, OR=1.3-1.69), a synonymous coding variant in exon 22.

Traits studied:AtherosclerosisCoronary artery diseaseCoronary heart disease

About TNC

This gene encodes an extracellular matrix protein with a spatially and temporally restricted tissue distribution. This protein is homohexameric with disulfide-linked subunits, and contains multiple EGF-like and fibronectin type-III domains. It is implicated in guidance of migrating neurons as well as axons during development, synaptic plasticity, and neuronal regeneration. [provided by RefSeq, Jul 2011]

View all TNC variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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