rs149474009

This is a intron variant variant in the CDX1 gene.

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GWAS Catalog Trait Associations (1)

Genome-wide significant associations (p < 5×10⁻⁸) from the NHGRI-EBI GWAS Catalog.

beta-type platelet-derived growth factor receptor level

Thareja G et al. “Differences and commonalities in the genetic architecture of protein quantitative trait loci in European and Arab populations.” Human Molecular Genetics 32(6):907-916 (2023)

Allele A

OR 0.68

p 2.0e-16

N 2,935

Large GWAS

Greater Middle Eastern (Middle Eastern, North African or Persian)

About CDX1

This gene is a member of the caudal-related homeobox transcription factor gene family. The encoded DNA-binding protein regulates intestine-specific gene expression and enterocyte differentiation. It has been shown to induce expression of the intestinal alkaline phosphatase gene, and inhibit beta-catenin/T-cell factor transcriptional activity. [provided by RefSeq, Jul 2008]

View all CDX1 variants →

Gene information from NCBI Gene. Variant classifications from ClinVar.

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